View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13841_low_1 (Length: 575)
Name: NF13841_low_1
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 21)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 3 - 557
Target Start/End: Original strand, 2891093 - 2891653
Alignment:
| Q |
3 |
tgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgtt |
102 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||| | |
|
|
| T |
2891093 |
tgaaccaaaagcatattcaggcgtaatagtcaacaaagctacctcacccttcttcatggtcagtacagctttatcaagcccatcaatcacttgctctgct |
2891192 |
T |
|
| Q |
103 |
caatacaacaaacactcactttagttgatgtaaaaacaaattatggtgagaaggtgaaacaatgggaaaattaaaattaccctcgtctgttttaaattca |
202 |
Q |
| |
|
|||||||| || || |||||||| ||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2891193 |
caatacaaaaagcattcactttatttgatttaaaaacaaatgatggtgagagggtgaaacattgggaaaattaaaattaccctcgtctgttttaaattca |
2891292 |
T |
|
| Q |
203 |
aacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaa |
302 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2891293 |
aacagatccgcttcatcatcatcaccatcattatatcccttgttcaaaaatacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaa |
2891392 |
T |
|
| Q |
303 |
atgaggagacaacacatcagaaacga--cactaaatccattnnnnnnnngagccatcatttcataatatattagcaatcaatcaatgatgaatgatgatt |
400 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2891393 |
atgaggagataacacatcagaaccgatgcactaaatccattaaaaaagagagccatcatatcataatatattagcaatcaatcaatgatgaatgatgatt |
2891492 |
T |
|
| Q |
401 |
tacatttcacaagagctccctcatttggacg----gtcagctccttctccttccttgagaagcagcttacgaaaagttgctttgttccaagaaactaact |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2891493 |
tacatttcacaagagctccctcatttggacggtacgtcagctccttctccttccttgagaagctgcttatgaaaagttgctttgttccaagaaactaacc |
2891592 |
T |
|
| Q |
497 |
cgagagtgatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggcct |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2891593 |
tgagagtgatctgcaatgttgcgttaggtggaactgaagcttcatcatggtgagctggcct |
2891653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 3 - 557
Target Start/End: Complemental strand, 3144170 - 3143609
Alignment:
| Q |
3 |
tgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgtt |
102 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |||||||||||||||||| | |
|
|
| T |
3144170 |
tgaaccaaaagcatattcaggcgtaatagtcaacaaagctacctcacctttcttcatggtcagtacagctttatcaagcccatcaatcacttgctctgct |
3144071 |
T |
|
| Q |
103 |
caatacaacaaacactcactttagttgatgtaaaaacaaattatggtgagaaggtgaaacaatgggaaaattaaaattaccctcgtctgttttaaattca |
202 |
Q |
| |
|
|||||||| || || |||||||| ||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3144070 |
caatacaaaaagcattcactttatttgatttaaaaacaaatgatggtgagagggtgaaacattgggaaaattaaaattaccctcgtctgttttaaattca |
3143971 |
T |
|
| Q |
203 |
aacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaa |
302 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3143970 |
aacagatccgcttcatcatcatcaccatcattatatcccttgttcaaaaatacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaa |
3143871 |
T |
|
| Q |
303 |
atgaggagacaacacatcagaaacga--cactaaatccatt-nnnnnnnngagccatcatttcataatatattagcaatcaatcaatgatgaatgatgat |
399 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3143870 |
atgaggagataacacatcagaaccgatgcactaaatccattaaaaaaaaagagccatcatatcataatatattagcaatcaatcaatgatgaatgatgat |
3143771 |
T |
|
| Q |
400 |
ttacatttcacaagagctccctcatttggacgg----tcagctccttctccttccttgagaagcagcttacgaaaagttgctttgttccaagaaactaac |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
3143770 |
ttacatttcacaagagctccctcatttggacggtacatcagctccttctccttccttgagaagctgcttatgaaaagttgctttgtaccaagaaactaac |
3143671 |
T |
|
| Q |
496 |
tcgagagtgatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggcct |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3143670 |
ctgagagtgatctgcaatgttgcgttaggtggaactgaagcttcatcatggtgagctggcct |
3143609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 555
Target Start/End: Complemental strand, 2795071 - 2794522
Alignment:
| Q |
3 |
tgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgtt |
102 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||| | |
|
|
| T |
2795071 |
tgaaccaaaagcatattcaggtgtaatagtcaacaaagctacctcacccttcttcatggtcagtacagctttatcaagcccatcaatcacttgctctgct |
2794972 |
T |
|
| Q |
103 |
caatacaacaaacactcactttagttgatgtaaaaacaaattatggtgagaaggtgaaacaatgggaaaattaaaattaccctcgtctgttttaaattca |
202 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
2794971 |
caatacaaaaagcattcactttagttgatataaaaacaaattatggtgagagggtgaaac-atggaaaaattaaaattaccctcatctgttttaaattca |
2794873 |
T |
|
| Q |
203 |
aacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaa |
302 |
Q |
| |
|
||||| |||| | ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2794872 |
aacagctcca------cttcatcaccatcactatagcccttcttaaaaaatacagtgccatcttgcagcttaccaattagtttcactacaaaaatgcaaa |
2794779 |
T |
|
| Q |
303 |
atgaggagacaacacatcagaaacga--cactaaatcca-ttnnnnnnnngagccatcatttcataatatattagcaatcaatcaatgatgaatgatgat |
399 |
Q |
| |
|
||||||| | | |||||||||| ||| ||||||||||| || ||||||||| ||||||||||||||| || ||||| ||||| |
|
|
| T |
2794778 |
atgaggatatatcacatcagaaccgatgcactaaatccatttaaaaagaacagccatcatatcataatatattagc-atgaatca----------atgat |
2794690 |
T |
|
| Q |
400 |
ttacatttcacaagagctccctcatttggacggtcagctccttctccttccttgagaagcagcttacgaaaag----ttgctttg--------ttccaag |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| | || ||||||||||| || ||| | ||||||| |
|
|
| T |
2794689 |
ttacatttcacaagagctccctcatttggacagtcgtccccttctccttccttgaggaccatcttacgaaaaggtccttccttaggtccttccttccaag |
2794590 |
T |
|
| Q |
488 |
aaactaactcgagagtgatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggc |
555 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794589 |
aaacaaactcgagaataatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggc |
2794522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 2876645 - 2876960
Alignment:
| Q |
3 |
tgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgtt |
102 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||| |||||||||||||||||| | |
|
|
| T |
2876645 |
tgaaccaaaagcatattcaggcgcaatagtcaacaaagctacctcatccttcttcatggtcagtacagctctatcaagcccatcaatcacttgctctgct |
2876744 |
T |
|
| Q |
103 |
caatacaacaaacactcactttagttgatgtaaaaacaaattatggtgagaaggtgaaacaatgggaaaattaaaattaccctcgtctgttttaaattca |
202 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2876745 |
caatacaaaaagcattcactttagttgatataaaaacaaattatggtgagagggtgaaacatggggaaaattaaaattaccctcgtctgttttaaattca |
2876844 |
T |
|
| Q |
203 |
aacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaa |
302 |
Q |
| |
|
||||| |||| | ||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2876845 |
aacagctcca------cttcatcaccatcactatatcccttcttaaaaaatacagtgccatcttgcagcttaccaattagtttcactacaaaaatgcaaa |
2876938 |
T |
|
| Q |
303 |
atgaggagacaacacatcagaa |
324 |
Q |
| |
|
||||||| | | |||||||||| |
|
|
| T |
2876939 |
atgaggatatatcacatcagaa |
2876960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 399 - 555
Target Start/End: Original strand, 2877036 - 2877192
Alignment:
| Q |
399 |
tttacatttcacaagagctccctcatttggacggtcagctccttctccttccttgagaagcagcttacgaaaagttgctttgttccaagaaactaactcg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | || ||||||||||| | || ||||||||||| |||||| |
|
|
| T |
2877036 |
tttacatttcacaagagctccctcatttggacagtcgtctccttctccttccttgaggaccatcttacgaaaaggtcattccttccaagaaacaaactcg |
2877135 |
T |
|
| Q |
499 |
agagtgatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggc |
555 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2877136 |
agaataatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggc |
2877192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 3158720 - 3158619
Alignment:
| Q |
3 |
tgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgtt |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3158720 |
tgaaccaaaagcatattgtggcgcaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgtt |
3158621 |
T |
|
| Q |
103 |
ca |
104 |
Q |
| |
|
|| |
|
|
| T |
3158620 |
ca |
3158619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 3500350 - 3500549
Alignment:
| Q |
3 |
tgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgtt |
102 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| | ||||| | || |||| | |
|
|
| T |
3500350 |
tgaaccaaaagcatatcgatatggaatagtcaacaacgctacctcacccttcttcatggtcattacagctctatcaagcccttcaattattttatctgct |
3500449 |
T |
|
| Q |
103 |
caatacaacaaacactcactttagttgatgtaaaaacaaatt-atggtgagaaggtgaaacaatgggaaaattaaaattaccctcgtctgttttaaattc |
201 |
Q |
| |
|
|||||||||||||| | |||||||||| | ||||||||||| || ||||| ||| |||| || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
3500450 |
caatacaacaaacaat-actttagttggtacaaaaacaaattaattgtgag-aggccaaac-attggaaaattcaaattaccctcgtctgttttaaattc |
3500546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 3495199 - 3495319
Alignment:
| Q |
3 |
tgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgtt |
102 |
Q |
| |
|
||||||||||||||| | || | |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| | |
|
|
| T |
3495199 |
tgaaccaaaagcatactcgggtgcaatagtcaacaatgctacctcacccttcttcatggtcattacagctctatcgagcccatcaatcacttgctctgct |
3495298 |
T |
|
| Q |
103 |
caatacaacaaacactcactt |
123 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
3495299 |
caatacaacaaacattcactt |
3495319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 14388793 - 14388913
Alignment:
| Q |
3 |
tgaaccaaaagcatattgtggcggaatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgtt |
102 |
Q |
| |
|
||||||||||||||| | || | |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| | |
|
|
| T |
14388793 |
tgaaccaaaagcatactcgggtgcaatagtcaacaatgctacctcacccttcttcatggtcattacagctttatcgagcccatcaatcacttgctctgct |
14388892 |
T |
|
| Q |
103 |
caatacaacaaacactcactt |
123 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
14388893 |
caatacaacaaacattcactt |
14388913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 155 - 309
Target Start/End: Complemental strand, 8627758 - 8627613
Alignment:
| Q |
155 |
ggtgaaacaatgggaaaattaaaattaccctcgtctgttttaaattcaaacagatccagttcatcatcatcaccatcactatagcccttgttcaaaagta |
254 |
Q |
| |
|
||||||||| ||| |||||| |||||||| ||||||||||||||||||||||| || | || ||||||||| | |||||||| || |||| || |
|
|
| T |
8627758 |
ggtgaaacattggaaaaattcaaattaccgtcgtctgttttaaattcaaacagctc-------tgat--tcaccatcattgtagcccttcttaaaaaata |
8627668 |
T |
|
| Q |
255 |
cagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8627667 |
cagtgccatcttgcagcttaccaattagtttcactacgaaaatgcaaaatgagga |
8627613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 3495433 - 3495504
Alignment:
| Q |
238 |
gcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga |
309 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
3495433 |
gcccttcttcaaaaagacagtgccatcttgcaacttaccaattagtttcactgcaaagatgcaaaatgagga |
3495504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 14389007 - 14389078
Alignment:
| Q |
238 |
gcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga |
309 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||| ||||||||| ||||| ||| |||| |||||||||||||| |
|
|
| T |
14389007 |
gcccttcttcaaaaatacagtgtcatcttgcaacttaccaataagtttcacttcaaagatgcaaaatgagga |
14389078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 481 - 543
Target Start/End: Original strand, 3495687 - 3495749
Alignment:
| Q |
481 |
ttccaagaaactaactcgagagtgatctgcaatgttgcgttaggtggaactgaaccttcatca |
543 |
Q |
| |
|
||||||||||||||||| || || |||| ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
3495687 |
ttccaagaaactaactcaagggtaatctccaatgttgcattaggtggaactgcaccttcatca |
3495749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 2882695 - 2882731
Alignment:
| Q |
3 |
tgaaccaaaagcatattgtggcggaatagtcaacaaa |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2882695 |
tgaaccaaaagcatattgtggcggaatagtcaacaaa |
2882731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 3151787 - 3151752
Alignment:
| Q |
4 |
gaaccaaaagcatattgtggcggaatagtcaacaaa |
39 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3151787 |
gaaccaaaagcatattgtggcggaatagtcaacaaa |
3151752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 454
Target Start/End: Original strand, 3495580 - 3495639
Alignment:
| Q |
395 |
atgatttacatttcacaagagctccctcatttggacggtcagctccttctccttccttga |
454 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
3495580 |
atgatttacattttacaacagctccatcatttggacgctcatatccttctccttccttga |
3495639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 1790952 - 1790850
Alignment:
| Q |
27 |
aatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgttcaatacaacaaacactcactttag |
126 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||||||||| ||| |||| | | |||||||| ||| |||| |||||| ||| ||||||| | |
|
|
| T |
1790952 |
aatagtcaacgatgctacctcacccttcttcatactcattacagctctatcaagccctctagtcacttgcgctgctcaacacaacagacattcactttcg |
1790853 |
T |
|
| Q |
127 |
ttg |
129 |
Q |
| |
|
||| |
|
|
| T |
1790852 |
ttg |
1790850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 3500544 - 3500606
Alignment:
| Q |
245 |
ttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgag |
307 |
Q |
| |
|
||||||| || || |||| |||||||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
3500544 |
ttcaaaaatatagagccaccttgcagcctaccaattagtttcactacacaaatgcaaaatgag |
3500606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 3500680 - 3500719
Alignment:
| Q |
391 |
aatgatgatttacatttcacaagagctccctcatttggac |
430 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
3500680 |
aatgatgatttacatttcacaacagatccctcatttggac |
3500719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 8627552 - 8627518
Alignment:
| Q |
391 |
aatgatgatttacatttcacaagagctccctcatt |
425 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
8627552 |
aatgatgatttacatttcacaacagctccctcatt |
8627518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 541
Target Start/End: Complemental strand, 8627456 - 8627393
Alignment:
| Q |
481 |
ttccaagaaactaactcgagagtgatctgcaatg---ttgcgttaggtggaactgaaccttcat |
541 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
8627456 |
ttccaagaaaccaactcaagagtaatctgcaacgacgttgcattaggtggaactgaaccttcat |
8627393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 13005716 - 13005652
Alignment:
| Q |
361 |
tcataatatattagcaatcaatcaatgatgaatgatgatttacatttcacaagagctccctcattt |
426 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13005716 |
tcataatatattagca-tcaatgaattatgaatgatgatttacatttcacaagagctttctcattt |
13005652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 18847756 - 18847832
Alignment:
| Q |
27 |
aatagtcaacaaagctacctcacccttcttcatggtcattacagctatattaagcacatcaatcacttgctctgttc |
103 |
Q |
| |
|
|||| |||| || |||||||||||||||||||| |||| ||||||| ||| |||| ||||||| ||||| ||||||| |
|
|
| T |
18847756 |
aataatcaataatgctacctcacccttcttcatagtcaatacagctttatcaagcccatcaatgacttgttctgttc |
18847832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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