View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13841_low_12 (Length: 350)
Name: NF13841_low_12
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 49265126 - 49264801
Alignment:
| Q |
12 |
tcatcctatacaaacaaccaatcagaaatttttgtttaataaaattaaaattaaat-----aatagacacgttctttcctcagcatgtttggagcagnnn |
106 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49265126 |
tcatcctatacaaacaaccaatcaaaattttttgtttaataaaattaaaattaaattaaataatagacacgttctttcctcaacatgtttggagcagctt |
49265027 |
T |
|
| Q |
107 |
nnnnnnnnnnnnnncctacctttttctttcaacatgatctttccttcttgttcccgctccttaaa-ctcaaccgtttcnnnnnnnatctcttcattgtat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
49265026 |
ttttttttctttt--ctacctttttctttcaacatgatctttccttcttgttcccgcttcttaaaactcaaccgtttctttttttatctcttcattgtat |
49264929 |
T |
|
| Q |
206 |
ctatcgttcttgtgctcaggatatgactttcatattgatggttgatttctccctcatagcaagcactttccattaacatttcaacaaaggatccaccgtc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49264928 |
ctatcgttcttgtgctcaggatatgacttccatattgatggttgatttctccctcatagcaagcactttccattaacatttcaacaaaggatccaccgtc |
49264829 |
T |
|
| Q |
306 |
caaataaaagcaaattgtacaattatag |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
49264828 |
caaataaaagcaaattgtacaattatag |
49264801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 49263831 - 49263912
Alignment:
| Q |
12 |
tcatcctatacaaacaaccaatcagaaatttttgtttaataaa------attaaaattaaataatagacacgttctttcctc |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
49263831 |
tcatcctatacaaacaaccaatcagaaatttttatttaataaaattaaaattaaaattaaataatagacacgttctatcctc |
49263912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 18897113 - 18896805
Alignment:
| Q |
12 |
tcatcctatacaaacaaccaatcagaaatttttgtttaataaaattaaaattaaa------taatagacacgttctttcctcagcatgtttggagcagnn |
105 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18897113 |
tcatcctatacaaacaaccaatcaaaaaattttgtttaataaaattaaaattaaaattaaataatagacacgttctttcctcagcatgtttggagcagtt |
18897014 |
T |
|
| Q |
106 |
nnnnnnnnnnnnnnncctacctttttctttcaacatgatctttccttcttgttcccgctccttaaa-ctcaaccgtttcnnnnnnnatctcttcattgta |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
18897013 |
tttttttttttttt-cctacctttttctttcaacatgatctttccttcttgttcccgctccttaaaactcaaccgtttctttttttatctcttcattgta |
18896915 |
T |
|
| Q |
205 |
tctatcgttcttgtgctcaggatatgactttcatattgatggttgatttctccctcatagcaagcactttccattaacatttcaacaaaggatccaccgt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18896914 |
tctatcgttcttgtgctcaggatatgactttcatattgatggttgatttttccctcatagtaagcactttccattaacatttcaacaaaggatccaccgt |
18896815 |
T |
|
| Q |
305 |
ccaaataaaa |
314 |
Q |
| |
|
|||||||||| |
|
|
| T |
18896814 |
ccaaataaaa |
18896805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 18891927 - 18892008
Alignment:
| Q |
12 |
tcatcctatacaaacaaccaatcagaaatttttgtttaataaa------attaaaattaaataatagacacgttctttcctc |
87 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
18891927 |
tcatcctatacaaacaaccaatcaaaaatttttgtttaataaaattaaaattaaaattaaataatagacacgttctatcctc |
18892008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University