View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13841_low_15 (Length: 317)

Name: NF13841_low_15
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13841_low_15
NF13841_low_15
[»] chr4 (3 HSPs)
chr4 (16-237)||(51704352-51704565)
chr4 (237-295)||(9598016-9598074)
chr4 (70-161)||(13968317-13968406)
[»] chr1 (2 HSPs)
chr1 (234-291)||(52111346-52111403)
chr1 (237-287)||(46668804-46668854)
[»] chr8 (4 HSPs)
chr8 (70-161)||(14051322-14051413)
chr8 (239-288)||(6181417-6181466)
chr8 (238-295)||(20521646-20521703)
chr8 (70-145)||(39688068-39688143)
[»] chr3 (5 HSPs)
chr3 (236-287)||(3090606-3090657)
chr3 (70-156)||(17036283-17036368)
chr3 (237-288)||(48443667-48443718)
chr3 (238-291)||(29361066-29361119)
chr3 (237-295)||(12139562-12139620)
[»] chr5 (4 HSPs)
chr5 (70-156)||(37394880-37394966)
chr5 (239-287)||(10243074-10243122)
chr5 (73-127)||(42614970-42615024)
chr5 (238-288)||(36438089-36438139)
[»] chr2 (4 HSPs)
chr2 (70-161)||(1542801-1542892)
chr2 (70-156)||(41781481-41781567)
chr2 (238-288)||(14724378-14724428)
chr2 (70-118)||(24983903-24983951)
[»] chr6 (2 HSPs)
chr6 (238-287)||(5358705-5358754)
chr6 (239-296)||(8251174-8251231)
[»] scaffold0092 (1 HSPs)
scaffold0092 (72-154)||(46301-46383)
[»] chr7 (1 HSPs)
chr7 (243-295)||(2486581-2486633)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 51704352 - 51704565
Alignment:
Q  16 ccaccacccggcgagcccgggctcaatagtccattaacacactaannnnnnnn-aggcaaactcaatatttccacacgcgcgcgcataagaatccttgac 114  Q
    |||||||||||||| ||| ||| ||||||||||||||| ||||||         ||||||| ||||||||||||||||||  |  |||||||||||| ||    
T  51704352 ccaccacccggcgatcccaggcccaatagtccattaacccactaatttttttttaggcaaattcaatatttccacacgcgtcc--ataagaatccttaac 51704449  T
Q  115 tctataatttttgattagaatctataaaatttctgactccgctactggatatattcgaacccaaattatcatcgggatctcattgttccgaattgatgtt 214  Q
    ||||  ||||||| ||||| |||||||||||||||| |||      | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51704450 tcta--atttttggttagattctataaaatttctgattcca-----gaatatattcaaacccaaattatcatcgggatctcattgttccgaattgatgtt 51704542  T
Q  215 ggaaatgtgaagcatatgaatgg 237  Q
    |||||||||||||| ||||||||    
T  51704543 ggaaatgtgaagcacatgaatgg 51704565  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 9598074 - 9598016
Alignment:
Q  237 ggagaaactcttacttggtcacaagaccaacacctcatatttagacacacacacatgaa 295  Q
    |||||||||||| ||| |||||||||||||||||||| |||||| ||||||| ||||||    
T  9598074 ggagaaactcttgcttagtcacaagaccaacacctcacatttaggcacacacccatgaa 9598016  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 13968317 - 13968406
Alignment:
Q  70 ggcaaactcaatatttccacacgcgcgcgcataagaatccttgactctataatttttgattagaatctataaaatttctgactccgctactg 161  Q
    |||||||||||||||| |||| ||||  ||| |||||| ||||||||  ||||||||| | ||| ||||||||||| ||| |||||| ||||    
T  13968317 ggcaaactcaatattttcacatgcgccagcacaagaattcttgactc--taatttttgctcagactctataaaattcctggctccgccactg 13968406  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 52111346 - 52111403
Alignment:
Q  234 atgggagaaactcttacttggtcacaagaccaacacctcatatttagacacacacaca 291  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  52111346 atgggagaaactcttacttgatcacaagaccaacacctcacatttagacacacacaca 52111403  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 46668804 - 46668854
Alignment:
Q  237 ggagaaactcttacttggtcacaagaccaacacctcatatttagacacaca 287  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  46668804 ggagaaactcttacttggtcacaagaccaacgcctcacatttaggcacaca 46668854  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 14051322 - 14051413
Alignment:
Q  70 ggcaaactcaatatttccacacgcgcgcgcataagaatccttgactctataatttttgattagaatctataaaatttctgactccgctactg 161  Q
    |||||||||||||||| ||||||||| ||||||| ||| | || ||||||||||||||  |||| | |||||||||||||||||||| ||||    
T  14051322 ggcaaactcaatattttcacacgcgcacgcataataattcctggctctataatttttgcctagactttataaaatttctgactccgccactg 14051413  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 6181466 - 6181417
Alignment:
Q  239 agaaactcttacttggtcacaagaccaacacctcatatttagacacacac 288  Q
    |||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  6181466 agaaactcttacttagtcacaagaccaacacctcacatttaggcacacac 6181417  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 20521703 - 20521646
Alignment:
Q  238 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacacacatgaa 295  Q
    |||||||||||||||  ||||| |||||||||||||||||||  ||||||| ||||||    
T  20521703 gagaaactcttacttaatcacaggaccaacacctcatatttaagcacacacccatgaa 20521646  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 39688143 - 39688068
Alignment:
Q  70 ggcaaactcaatatttccacacgcgcgcgcataagaatccttgactctataatttttgattagaatctataaaatt 145  Q
    |||||||||||||||| ||||||| ||| || || ||| |||| |||||||||||||| ||||  ||| |||||||    
T  39688143 ggcaaactcaatattttcacacgcacgcacacaaaaattcttggctctataatttttgcttaggctctgtaaaatt 39688068  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 3090606 - 3090657
Alignment:
Q  236 gggagaaactcttacttggtcacaagaccaacacctcatatttagacacaca 287  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3090606 gggagaaactcttacatggtcacaagaccaacacctcatatttagacacaca 3090657  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 17036283 - 17036368
Alignment:
Q  70 ggcaaactcaatatttccacacgcgcgcgcataagaatccttgactctataatttttgattagaatctataaaatttctgactccgc 156  Q
    |||||||||||||||| |||||||||||| |||||||| | || |||||||||||||| | ||  ||||||||||||||| ||||||    
T  17036283 ggcaaactcaatattttcacacgcgcgcgtataagaattcctgcctctataatttttg-tcaggctctataaaatttctggctccgc 17036368  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 48443718 - 48443667
Alignment:
Q  237 ggagaaactcttacttggtcacaagaccaacacctcatatttagacacacac 288  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||||||||||    
T  48443718 ggagaaactcttgcttagtcacaagaccaacacctcacatttagacacacac 48443667  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 29361119 - 29361066
Alignment:
Q  238 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacacaca 291  Q
    ||||||||||||||||||||||||| || || |||||||||||||||| |||||    
T  29361119 gagaaactcttacttggtcacaagatcatcatctcatatttagacacatacaca 29361066  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 12139562 - 12139620
Alignment:
Q  237 ggagaaactcttacttggtcacaagaccaacacctcatatttagacacacacacatgaa 295  Q
    ||||||||||||||||||||||| ||||||||| ||| |||||| ||||| | ||||||    
T  12139562 ggagaaactcttacttggtcacatgaccaacacatcacatttaggcacactcccatgaa 12139620  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 37394880 - 37394966
Alignment:
Q  70 ggcaaactcaatatttccacacgcgcgcgcataagaatccttgactctataatttttgattagaatctataaaatttctgactccgc 156  Q
    ||||||||||||||||  ||| |||| |||| |||||| ||||||||||||||||||| | ||| ||||||||||||||| ||||||    
T  37394880 ggcaaactcaatatttttacatgcgcccgcacaagaattcttgactctataatttttgctcagactctataaaatttctggctccgc 37394966  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 10243074 - 10243122
Alignment:
Q  239 agaaactcttacttggtcacaagaccaacacctcatatttagacacaca 287  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  10243074 agaaactcttacttggtcacaggaccaacacctcacatttagacacaca 10243122  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 42615024 - 42614970
Alignment:
Q  73 aaactcaatatttccacacgcgcgcgcataagaatccttgactctataatttttg 127  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||| ||||||    
T  42615024 aaactcaatattttcacacgcgcgcgcacaagaattcttgactctatattttttg 42614970  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 36438139 - 36438089
Alignment:
Q  238 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacac 288  Q
    |||||||||| ||||| |||||||||||||| |||| |||||| |||||||    
T  36438139 gagaaactctaacttgatcacaagaccaacatctcacatttaggcacacac 36438089  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 1542801 - 1542892
Alignment:
Q  70 ggcaaactcaatatttccacacgcgcgcgcataagaatccttgactctataatttttgattagaatctataaaatttctgactccgctactg 161  Q
    |||||||||||||||| |||||||||||||| |||||| ||||||||| |||||||||   ||  ||||||||||| ||| |||||| ||||    
T  1542801 ggcaaactcaatattttcacacgcgcgcgcacaagaattcttgactctttaatttttgcccaggctctataaaattcctggctccgccactg 1542892  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 41781481 - 41781567
Alignment:
Q  70 ggcaaactcaatatttccacacgcgcgcgcataagaatccttgactctataatttttgattagaatctataaaatttctgactccgc 156  Q
    |||||||||||||||| | |||| ||| ||| || ||| |||||||||||||||||||   ||| ||||||||||| ||| ||||||    
T  41781481 ggcaaactcaatattttcgcacgtgcgtgcacaataattcttgactctataatttttgtccagattctataaaattcctggctccgc 41781567  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 14724428 - 14724378
Alignment:
Q  238 gagaaactcttacttggtcacaagaccaacacctcatatttagacacacac 288  Q
    ||||||||||||| | |||||| ||||||||||||| |||||| |||||||    
T  14724428 gagaaactcttacctagtcacaggaccaacacctcacatttaggcacacac 14724378  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 24983903 - 24983951
Alignment:
Q  70 ggcaaactcaatatttccacacgcgcgcgcataagaatccttgactcta 118  Q
    |||||||||||||||| |||| ||||||||| |||||| ||| ||||||    
T  24983903 ggcaaactcaatattttcacatgcgcgcgcacaagaattcttcactcta 24983951  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 5358705 - 5358754
Alignment:
Q  238 gagaaactcttacttggtcacaagaccaacacctcatatttagacacaca 287  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  5358705 gagaaactcttacttggtcacaagaccaacacctcacatttaggcacaca 5358754  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 8251174 - 8251231
Alignment:
Q  239 agaaactcttacttggtcacaagaccaacacctcatatttagacacacacacatgaat 296  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  8251174 agaaacttttacttggtcacaagaccaacaccttatatttagacatacacacaagaat 8251231  T

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Target: scaffold0092 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 46383 - 46301
Alignment:
Q  72 caaactcaatatttccacacgcgcgcgcataagaatccttgactctataatttttgattagaatctataaaatttctgactcc 154  Q
    ||||||||||||||  ||||||||| |||||||||| | || || ||||||||||  ||||  ||||||||||||||| ||||    
T  46383 caaactcaatatttttacacgcgcgagcataagaattcctggctttataatttttacttaggctctataaaatttctggctcc 46301  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 2486581 - 2486633
Alignment:
Q  243 actcttacttggtcacaagaccaacacctcatatttagacacacacacatgaa 295  Q
    ||||||||||||| ||| ||||||||||||||||||||  |||||| ||||||    
T  2486581 actcttacttggttacaggaccaacacctcatatttaggtacacactcatgaa 2486633  T

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