View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_19 (Length: 301)
Name: NF13841_low_19
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 43219310 - 43219042
Alignment:
| Q |
20 |
ggtttcatgtcaccagcatcccgaggaatgctgttaacaggtatgataattttgtatcttttcctggggattgcttccggatatgtaagtgtacgtctct |
119 |
Q |
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| T |
43219310 |
ggtttcatgtcaccagcatcccgaggaatgctgttaacaggtatgataattttgtatcttttcctggggattgcttccggatatgtaagtgtacgtctct |
43219211 |
T |
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| Q |
120 |
ggaggacaattaagggaacttcagaagggtggagatcgatttcctggtttgctgcttgctttttccctggaattgcttttacgattctaacagcactgaa |
219 |
Q |
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| T |
43219210 |
ggaggacaattaagggaacttcagaagggtggagatcgatttcctggtttgctgcttgctttttccctggaattgcttttacgattctaacagcactgaa |
43219111 |
T |
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| Q |
220 |
ttttgttctttggggcagcaacagtacgggtgcacttcccatttccttgtatttcaaattgtttttcct |
288 |
Q |
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| T |
43219110 |
ttttgttctttggggcagcaacagtacgggtgcacttcccatttccttgtatttcaaattgtttttcct |
43219042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 43273361 - 43273464
Alignment:
| Q |
121 |
gaggacaattaagggaacttcagaagggtggagatcgatttcctggtttgctgcttgctttttccctggaattgcttttacgattctaacagcactgaat |
220 |
Q |
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|||||| ||| |||||||||||||||||||||| ||| |||||||||||||||| | |||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
43273361 |
gaggaccattgagggaacttcagaagggtggaggtcggtttcctggtttgctgcatacttttttcctggaattacttttacgattctaacagcactgaat |
43273460 |
T |
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| Q |
221 |
tttg |
224 |
Q |
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|||| |
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| T |
43273461 |
tttg |
43273464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 37071460 - 37071713
Alignment:
| Q |
20 |
ggtttcatgtcaccagcatcccgaggaatgctgttaacaggtatgataattttgtatcttttcctggggattgcttccggatatgtaagtgtacgtctct |
119 |
Q |
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||||||||||| |||||||||||||| ||||| |||| || ||||| ||||| |||||| |||| || ||||| | || ||||| || |||||||| | |
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| T |
37071460 |
ggtttcatgtctccagcatcccgagggatgctactaactgggatgatcattttatatcttatccttggaattgccgctggctatgtcagcgtacgtctat |
37071559 |
T |
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| Q |
120 |
ggaggacaattaagggaacttcagaagggtggagatcgatttcctggtttgctgcttgctttttccctggaattgcttttacgattctaacagcactgaa |
219 |
Q |
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|||||| ||||||||||| ||||||||||||||||| |||| |||| |||||| || ||||| ||||| ||||||||| || || |||| ||| || |
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| T |
37071560 |
ggaggatcattaagggaacatcagaagggtggagatcagtttcttggtctgctgcatgtttttttcctggcattgcttttgttatccttacagtactcaa |
37071659 |
T |
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| Q |
220 |
ttttgttctttggggcagcaacagtacgggtgcacttcccatttccttgtattt |
273 |
Q |
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|||| |||| ||| |||||||||||| ||||| | || |||||||||||||| |
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| T |
37071660 |
ttttattctatggaacagcaacagtactggtgctatacctatttccttgtattt |
37071713 |
T |
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