View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_22 (Length: 280)
Name: NF13841_low_22
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 38138911 - 38139160
Alignment:
| Q |
20 |
gaaccgaggctaaactatatatagtatgagaatcatactctaatgccataagcaagaccttgaattccaacagtggctatggatgctccagaaagcttta |
119 |
Q |
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| T |
38138911 |
gaaccgaggctaaactata--tagtatgagaatcataccataatgccataagcaagaccttgaattccaacagtggctatggatgctccagcaagcttta |
38139008 |
T |
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| Q |
120 |
gagatcctaaatgtccacaaaatatcatggtcacaaagcttagcataaaattgcaaaggtagaaaataatggaagcaccagagagaatccataggagcca |
219 |
Q |
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| T |
38139009 |
gagatcctaaatgtccacaaaatatcatggtcacaaagcttagcataaaattgcaaaggtagaaaataatggaagcacca-agagaatccataggagcca |
38139107 |
T |
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| Q |
220 |
tgactcccaagcaacaagtttaagccaccatctcaactcaataggcctatgct |
272 |
Q |
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| T |
38139108 |
tgactcccaagcaacaagtttaagccaccatctcaactcaacaggcctatgct |
38139160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 40 - 270
Target Start/End: Complemental strand, 39315511 - 39315281
Alignment:
| Q |
40 |
atagtatgagaatcatactctaatgccataagcaagaccttgaattccaacagtggctatggatgctccagaaagctttagagatcctaaatgtccacaa |
139 |
Q |
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| T |
39315511 |
atagcatgagaatcataccataatgccataagcaagaccttgaattccaacactggctatggatgctccagcaagctctagagatcctaaatgtccacaa |
39315412 |
T |
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| Q |
140 |
aatatcatggtcacaaagcttagcataaaattgcaaaggtagaaaataatggaagcaccagagagaatccataggagccatgactcccaagcaacaagtt |
239 |
Q |
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| T |
39315411 |
aacatcatggtcacaaagcttaacataaaattgcaaaggtagacaacaatagaagcaccagaaaggatccataggagtcttgactcccaagcaacaagtt |
39315312 |
T |
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| Q |
240 |
taagccaccatctcaactcaataggcctatg |
270 |
Q |
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| T |
39315311 |
taagccaccatctcaacccaataggcctatg |
39315281 |
T |
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