View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_25 (Length: 261)
Name: NF13841_low_25
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 14282387 - 14282157
Alignment:
| Q |
17 |
gttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcgtgggaaga |
116 |
Q |
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| T |
14282387 |
gttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcgtgggaaga |
14282288 |
T |
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| Q |
117 |
gtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaacatgggaattctgggtact |
216 |
Q |
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| T |
14282287 |
gtacttcggtaacaagattcaacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaacatgggaattctgggtact |
14282188 |
T |
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| Q |
217 |
gcttcaataactgtatctgttcttacctttg |
247 |
Q |
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| T |
14282187 |
gcttcaataactgtagctgttcttacctttg |
14282157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 14320536 - 14320306
Alignment:
| Q |
17 |
gttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcgtgggaaga |
116 |
Q |
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|||| |||||| ||||||||| |||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14320536 |
gtttccagtttaagataatgacgagccgcgattcgaggatgaaggcgacaaacgagttacttaacaacatgcgtgtgattaagtttcaagcgtgggaaga |
14320437 |
T |
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| Q |
117 |
gtacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaacatgggaattctgggtact |
216 |
Q |
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| T |
14320436 |
gtactttggtaacaaaattcaacagtttcgcgaagctgagcatggatggattgcgaaattcttgtactattttgcagttaacataggagttttgggtact |
14320337 |
T |
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| Q |
217 |
gcttcaataactgtatctgttcttacctttg |
247 |
Q |
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| T |
14320336 |
gccccattagctgtaactgttcttacctttg |
14320306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 14304144 - 14303958
Alignment:
| Q |
18 |
ttttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcgtgggaagag |
117 |
Q |
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||||||||||| |||||||| |||||| |||||||| ||||| | || |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14304144 |
ttttcagtttcggataatgatgagccgcgattcgagaatgaagtcaacgaatgagttgcttaacaacatgcgtgtgattaaatttcaagcgtgggaagag |
14304045 |
T |
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| Q |
118 |
tacttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaacatggga |
204 |
Q |
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| T |
14304044 |
tacttcgggaacaagattcaacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgctgtgaacatggga |
14303958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 25885216 - 25885037
Alignment:
| Q |
19 |
tttcagtttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcgtgggaagagt |
118 |
Q |
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|||||||||||||| |||| || || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25885216 |
tttcagtttcagatgatgacaagtcgcgattcgaggatgaaggcgacaaatgagttgcttaacaacatgcgtgtgattaagtttcaagcttgggaagagt |
25885117 |
T |
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| Q |
119 |
acttcggtaacaagattcgacagtttcgtgaagccgaacatggatggattgggaaattcttgtactattttgcagttaac |
198 |
Q |
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| T |
25885116 |
atttcggtaacaagattaaacagtttcgtgaatccgagcatggatggattgggaaattcatgtactattttgctgttaac |
25885037 |
T |
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