View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_26 (Length: 240)
Name: NF13841_low_26
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_26 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 28619603 - 28619383
Alignment:
| Q |
16 |
attaaatacctcgggaatattcttcaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
115 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28619603 |
attaaatacctagggaatattctacaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
28619504 |
T |
|
| Q |
116 |
ctttcctttttc-atttatcaaggtcagatgataggttttgaataatggccaataattctctagtactggaannnnnnnnncacttttcttttgacattt |
214 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
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| T |
28619503 |
ctttcctttttcaatttatcaaggtcagatgataagttttgaataatggccaataattctctagtactgggatttttttttcacttttcttttgaccttt |
28619404 |
T |
|
| Q |
215 |
attaagaattgtttgagttac |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28619403 |
attaagaattgtttgagttac |
28619383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 28622285 - 28622454
Alignment:
| Q |
16 |
attaaatacctcgggaatattcttcaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
28622285 |
attaaatacctcgggaatgttcttcaaaacatcaatgttgccactatctttgtcactagggatatgcatatcttgttgacttcttgagctatcttttccc |
28622384 |
T |
|
| Q |
116 |
ctttcctttttc-atttatcaaggtcagatgataggttttgaataatggccaataattctctagtactgg |
184 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
28622385 |
ctttcctttttcaattgatcaaggtcagaagataggttttgaataatggccaataattctctaatactgg |
28622454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 28623259 - 28623428
Alignment:
| Q |
16 |
attaaatacctcgggaatattcttcaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
28623259 |
attaaatacctcgggaatgttcttcaaaacatcaatgttgccactatctttgtcactagggatatgcatatcttgttgacttcttgagctatcttttccc |
28623358 |
T |
|
| Q |
116 |
ctttcctttttc-atttatcaaggtcagatgataggttttgaataatggccaataattctctagtactgg |
184 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
28623359 |
ctttcctttttcaattgatcaaggtcagaagataggttttgaataatggccaataattctctaatactgg |
28623428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 1745532 - 1745697
Alignment:
| Q |
16 |
attaaatacctcgggaatattcttcaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
115 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||| |||||||||||| ||||||| ||||| | ||||||||||| |
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|
| T |
1745532 |
attaaatacctcgggaatgttcttcaagacatcaacattggaactatctttgtcactaaggatatgcatatcttgttgacttcttgcgatatcttttccc |
1745631 |
T |
|
| Q |
116 |
ctttcctttttc-atttatcaaggtcagatgataggttttgaataatggccaataattctctagta |
180 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
1745632 |
ctttcctttttcaattgttcaacttcagatgataggttttgaataatgaccattaattctctagta |
1745697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 14648605 - 14648770
Alignment:
| Q |
16 |
attaaatacctcgggaatattcttcaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |
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| T |
14648605 |
attaaatacctcgggaatattcttcaaaacattaatgttagtactatctttgtcactagggatatgcatatcatgttgacttcttgagatatcttttccc |
14648704 |
T |
|
| Q |
116 |
ctttcctttttc-atttatcaaggtcagatgataggttttgaataatggccaataattctctagta |
180 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14648705 |
ctttcctttttcaattgatcaaggtcagatgataggttttgaataatggccaataattctctagta |
14648770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 126893 - 127108
Alignment:
| Q |
16 |
attaaatacctcgggaatattcttcaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||| |
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|
| T |
126893 |
attaaatacctcgagaatattcttcaaaacataaatgttagtactatctttgtcaatagggatatgcatatcatgttgacttcttgagatatcttttccc |
126992 |
T |
|
| Q |
116 |
ctttcctttttc-atttatcaaggtcagatgataggttttgaataatggccaataattctctagtactggaannnnnnnnncacttttcttttgacattt |
214 |
Q |
| |
|
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
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|
| T |
126993 |
ctttcctttttcaattgatcaaggtcagaagataggttttgaataatggccaataattctctagtactggga--tttttttcacttttcttttgactttt |
127090 |
T |
|
| Q |
215 |
attaagaattgtttgagt |
232 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
127091 |
attaagaactgtttgagt |
127108 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 12617647 - 12617483
Alignment:
| Q |
16 |
attaaatacctcgggaatattcttcaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||| |
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|
| T |
12617647 |
attaaatacctcgggaatattcttcaaaacattaatgttagtactatctttgtcacta-tgatatgcatatcatgttgacttcttgagatatcttttccc |
12617549 |
T |
|
| Q |
116 |
ctttcctttttc-atttatcaaggtcagatgataggttttgaataatggccaataattctctagta |
180 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12617548 |
ctttcctttttcaattgatcaaggtcagatgataggttttgaataatggccaataattctctagta |
12617483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 20027208 - 20027096
Alignment:
| Q |
16 |
attaaatacctcgggaatattcttcaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
115 |
Q |
| |
|
|||||||||||||||||| ||||| | | || |||||||| ||||||||||| |||| ||||| |||||| ||||||| || ||| ||||||||||| |
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|
| T |
20027208 |
attaaatacctcgggaatgttcttatataaataaatgttggaactatctttgtaactaaggatacgcatatcatgttgacttcctgacatatcttttccc |
20027109 |
T |
|
| Q |
116 |
ctttcctttttca |
128 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20027108 |
ttttcctttttca |
20027096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 6764789 - 6764620
Alignment:
| Q |
16 |
attaaatacctcgggaatattcttcaaaacatcaatgttggtactatctttgtcactagggatatgcatattctgttgacctcttgagctatcttttccc |
115 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||| ||||||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
6764789 |
attaaatacctcgggaatgttcttcaagacatcaacattggaactatctttgtcactaacgatatgcatatcctgttgacttcttgcgatatcttttccc |
6764690 |
T |
|
| Q |
116 |
ctttcctttttc-atttatcaaggtcagatgataggttttgaataatggccaataattctctagtactgg |
184 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
6764689 |
ctttcctttttcaattcttcaacttcagatgatatgttttgaataatggccattaattctctattactgg |
6764620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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