View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_32 (Length: 221)
Name: NF13841_low_32
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_32 |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32600605 - 32600821
Alignment:
| Q |
1 |
aaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
32600605 |
aaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcagga |
32600704 |
T |
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| Q |
101 |
tctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagtttaacatgcataacattactag |
200 |
Q |
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|||||| ||| ||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600705 |
tctaat----atccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactag |
32600800 |
T |
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| Q |
201 |
tgaggttagttaattaccatt |
221 |
Q |
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|||||||| |||||||||||| |
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| T |
32600801 |
tgaggttaattaattaccatt |
32600821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32590157 - 32590373
Alignment:
| Q |
1 |
aaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcagga |
100 |
Q |
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| T |
32590157 |
aaaaattatttcatgcaccttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcagga |
32590256 |
T |
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| Q |
101 |
tctaattaatatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagtttaacatgcataacattactag |
200 |
Q |
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| T |
32590257 |
tc----taatatccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattag |
32590352 |
T |
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| Q |
201 |
tgaggttagttaattaccatt |
221 |
Q |
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| T |
32590353 |
tgaggttaattaattaccatt |
32590373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 24883774 - 24883687
Alignment:
| Q |
16 |
caccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatct |
103 |
Q |
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| T |
24883774 |
caccttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct |
24883687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 34577925 - 34578133
Alignment:
| Q |
9 |
tttcatgcaccttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatctaatta |
108 |
Q |
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| T |
34577925 |
tttcatgtaccttagctaatgcccaaatgctgaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatctaat-- |
34578022 |
T |
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| Q |
109 |
atatcaaaacattaatggcacatatgagaaattaatattggagtttgatatacttgtaatgatcttaagtttaacatgcataacattactagtgaggtta |
208 |
Q |
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||| ||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34578023 |
--atccaaacattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggtta |
34578120 |
T |
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| Q |
209 |
gttaattaccatt |
221 |
Q |
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| T |
34578121 |
attaattaccatt |
34578133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 34593767 - 34593856
Alignment:
| Q |
17 |
accttagctaatgcccagatgctgaaatgggcacgatattcttctgttgtcattcctccatttccaacttcgagcatatcaggatctaat |
106 |
Q |
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| T |
34593767 |
accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccattcccaacctcaagcatgtcaggatctaat |
34593856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 27532418 - 27532378
Alignment:
| Q |
63 |
ttgtcattcctccatttccaacttcgagcatatcaggatct |
103 |
Q |
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| T |
27532418 |
ttgtcatccctccatttccaacctcaagcatatcaggatct |
27532378 |
T |
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