View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_4 (Length: 446)
Name: NF13841_low_4
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 30 - 431
Target Start/End: Original strand, 52519036 - 52519436
Alignment:
| Q |
30 |
acctgtttctttcgtcccttgtcacctttcactgaatcacatctttcgctttacaattactagactatatagaatcgtttcacttctggaattttgnnnn |
129 |
Q |
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| T |
52519036 |
acctgtttctttcgtcccttgtcacctttcactgaatcacatctttcgctttacaattactagactatatagaatcgtttcacttctggagttttgtttt |
52519135 |
T |
|
| Q |
130 |
nnnattgtttctggctatgtatcccaagtttcaaaattaattggagccttttcaaaatcatcagaagccccaagaaatagtgatagtgagttcactagta |
229 |
Q |
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| T |
52519136 |
tttattgtttctggctatgtatcccaagtttcaaaat-aattggagccttttcaaaatcatcagaagccccaagaaatagtgatagtgagttcactagta |
52519234 |
T |
|
| Q |
230 |
taatatatttgatcaatctttctattatttcatgtttattagtnnnnnnnnnnnttaagagaataagcgtaacagcatggtcgttgcattatacaattga |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| |||||| |
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| T |
52519235 |
taatatatttgatcaatctttctattatttcatgtttattagtaaaaaaaaaaattaagataataagcgtaacagcatggtggttgcattatataattga |
52519334 |
T |
|
| Q |
330 |
agtccgcagaaagctgcagctaaattcttcatccctcttgaattccctcgactctcctctgatttcagatgacggtatggggaatgttgtagttaagaat |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52519335 |
agtccgcagaaagctgcagctaaattcttcatccctcttgaattccctcgactctcctctgatttcagatgacggtatggggaatgttgtagttaagaat |
52519434 |
T |
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| Q |
430 |
tg |
431 |
Q |
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|| |
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| T |
52519435 |
tg |
52519436 |
T |
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