View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_5 (Length: 430)
Name: NF13841_low_5
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_5 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 52614706 - 52615117
Alignment:
| Q |
1 |
aaaattatggtttgttatgcagcatctagtcatggctaatttagtgtaaagaagataaccttatataaaagtcacacctttttaatagatgaaatcaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52614706 |
aaaattatggtttgttatgcagcatctagtcatggctaatttagtgtaaagaagataaccttatataaaagtcacacctttttaatagatgaaatcaaac |
52614805 |
T |
|
| Q |
101 |
catgaataaatctagatgcaggaaagttaaacatatatatttgattctaaacaaaattaataggcatgctcaaaatcaatgtgaaatttgtacaaatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52614806 |
catgaataaatctagatgcaggaaagttaaacctatatatttgattgtaaacaaaattaataggcatgctcaaaatcaatgtgaaatttgtacaaatttg |
52614905 |
T |
|
| Q |
201 |
caatggtaagttaaacctcatttgattttcatctttggattcaaactgtgcttgcgaaacaagattgttttttggattcaaactctgctcaattcaggta |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52614906 |
caatggtaagttaaacctcatttgattttcagctttggattcaaactgtgcttgcgaaacaagattgttttttggattcaaactctgctcaattcaggta |
52615005 |
T |
|
| Q |
301 |
tgtgtgttcatctgatttgtgagttagtttgaattgtattaggtgtgattttgctgagttgagaatatattaagtgatttgtgagttagtttgaatctat |
400 |
Q |
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| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52615006 |
--tttgttcatctgatttgtgagttagtttgaatcgtattaggtgtgattttgctgagttgagaatatattaagtgatttgtgagttagtttgaatctat |
52615103 |
T |
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| Q |
401 |
tatgttcttgtatt |
414 |
Q |
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|||||||||||||| |
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| T |
52615104 |
tatgttcttgtatt |
52615117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 13370560 - 13370462
Alignment:
| Q |
244 |
aactgtgcttgcgaaacaagattgttttttggattcaaactctgctcaattcaggtatgtgtgttcatctgatttgtgagttagtttgaattgtattagg |
343 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |||||||| |
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| T |
13370560 |
aactgtgcttgcaaaacaaggttgttttttggattcaaactctgctcaattcatgtat-tgtgttcatctgatttgtgagttagtttggatcgtattagg |
13370462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 244 - 414
Target Start/End: Original strand, 20513271 - 20513440
Alignment:
| Q |
244 |
aactgtgcttgcgaaacaagattgttttttggattcaaactctgctcaattcaggtatgtgtgttcatctgatttgtgagttagtttgaattgtattagg |
343 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| || |||||||| |
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| T |
20513271 |
aactgtgcttgcaaaacaaggttgttttttggattcaaactctgctcaattcatgtat-tatgttcatctgatttgtgagttagtttggatcgtattagg |
20513369 |
T |
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| Q |
344 |
tgtgattttgctgagttgagaatatattaagtgatttgtgagttagtttgaatctattatgttcttgtatt |
414 |
Q |
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|| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20513370 |
tgcgattttgttgagttgaggatatattaagtgatttgtgagttagtttgaatctattatgttcttgtatt |
20513440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 244 - 414
Target Start/End: Original strand, 20029068 - 20029238
Alignment:
| Q |
244 |
aactgtgcttgcgaaacaa-gattgttttttggattcaaactctgctcaattcaggtatgtgtgttcatctgatttgtgagttagtttgaattgtattag |
342 |
Q |
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|||||||||||| |||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||||| |
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| T |
20029068 |
aactgtgcttgcaaaacaaaggttgttttttggattcaaactctgctcaattcatgtat-tgtgttcatctgatttgtgagttagtttggatcgtattag |
20029166 |
T |
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| Q |
343 |
gtgtgattttgctgagttgagaatatattaagtgatttgtgagttagtttgaatctattatgttcttgtatt |
414 |
Q |
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||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20029167 |
gtgcgattttgttgagttaagaatatattaagtgatttgtgagttagtttgaatctattatgttcttgtatt |
20029238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 244 - 414
Target Start/End: Original strand, 34254 - 34423
Alignment:
| Q |
244 |
aactgtgcttgcgaaacaagattgttttttggattcaaactctgctcaattcaggtatgtgtgttcatctgatttgtgagttagtttgaattgtattagg |
343 |
Q |
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|||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| || ||||||| |
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| T |
34254 |
aactttgcttgcaaaacaaggttgttttttggattcaaactctgctcaattcatgtat-tgtgttcatcttatttgtgagttagtttggatcatattagg |
34352 |
T |
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| Q |
344 |
tgtgattttgctgagttgagaatatattaagtgatttgtgagttagtttgaatctattatgttcttgtatt |
414 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34353 |
tgcgattttgttgagttgagaatatattaagtgatttgtgagttattttgaatctattatgttcttgtatt |
34423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23172974 - 23172898
Alignment:
| Q |
1 |
aaaattatggtttgttatgcagcatctagtcatggctaatttagtgtaaagaagataaccttatataaaagtcacac |
77 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23172974 |
aaaattatggtttgttatgcagcatctagtaatggctaatttagtgtaaagaagataaccttatataaaagtcacac |
23172898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 23172865 - 23172791
Alignment:
| Q |
340 |
taggtgtgattttgctgagttgagaatatattaagtgatttgtgagttagtttgaatctattatgttcttgtatt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23172865 |
taggtgtgattttgctgagttgagaatatattaagtgatttgtgagttagtttgaatctattatgttctagtatt |
23172791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 46747497 - 46747437
Alignment:
| Q |
55 |
ataaccttatataaaagtcacacctttttaatagatgaaatcaaaccatgaataaatctag |
115 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46747497 |
ataaacttatataaaagtcacacctttttaatagatgaaatcaaaccatgaataaatctag |
46747437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 46747267 - 46747194
Alignment:
| Q |
136 |
tatatttgattctaaacaaaattaataggcatgctcaaaatcaatgtgaaatttgtacaaatttgcaatggtaa |
209 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46747267 |
tatatttgattgtagggaaaattaataggcatgctcaaaatcaatgtgaaacttgtacaaatttgcaatggtaa |
46747194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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