View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_7 (Length: 409)
Name: NF13841_low_7
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 399
Target Start/End: Original strand, 32590270 - 32590662
Alignment:
| Q |
5 |
cattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttagttaattac |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32590270 |
cattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttaattaattac |
32590369 |
T |
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| Q |
105 |
cattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcataatatag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32590370 |
cattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcataatatag |
32590469 |
T |
|
| Q |
205 |
gaaaatgaagaaaataattgattttttcttttctttcatgactcaattattacgcaaaaagtgacattgtataatgttggaatgtgagttatcatattaa |
304 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| |||||||||||| |
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| T |
32590470 |
gaaaatgaagaaaataattg--gttttcttttctttcatgattcaattattatgcaaaaagagacatcgtataatgtgagaatgtgaattatcatattaa |
32590567 |
T |
|
| Q |
305 |
tttgacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
399 |
Q |
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| T |
32590568 |
ttttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
32590662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 32600718 - 32600946
Alignment:
| Q |
5 |
cattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttagttaattac |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||| |||||||| |
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| T |
32600718 |
cattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattac |
32600817 |
T |
|
| Q |
105 |
cattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcct-aggga-ggaataaagttagttggtcataatat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
32600818 |
cattccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagtcatgctaagggatggaataaagttagttggtcataatat |
32600917 |
T |
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| Q |
203 |
aggaaaatgaagaaaataattgatttttt |
231 |
Q |
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| T |
32600918 |
aagaaaatgaagaaaataattgatttttt |
32600946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 32601022 - 32601133
Alignment:
| Q |
288 |
gtgagttatcatattaatttgacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc |
387 |
Q |
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|
|||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
32601022 |
gtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggcccatgtagcaggatcttc |
32601121 |
T |
|
| Q |
388 |
ctttcccctatg |
399 |
Q |
| |
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| ||||||||| |
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|
| T |
32601122 |
ccatcccctatg |
32601133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 24883595 - 24883553
Alignment:
| Q |
101 |
ttaccattccatcctccaggtccagcataagatgcccatttat |
143 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
24883595 |
ttaccattccatcctccaggtccagcgtaagaagcccatttat |
24883553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
| Q |
309 |
acctatgccaattatctttaatatctcctgttgttctccaactatttcccacact |
363 |
Q |
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|||||| ||| ||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact |
24883380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 34578030 - 34578242
Alignment:
| Q |
5 |
cattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttagttaattac |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||| |||||||| |
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| T |
34578030 |
cattaatgacacatacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattac |
34578129 |
T |
|
| Q |
105 |
cattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcataatatag |
204 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || | ||||||||| ||||| ||| || ||| |
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| T |
34578130 |
cattccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgctgaagtagaataaagtcagttgatcacaacata- |
34578228 |
T |
|
| Q |
205 |
gaaaatgaagaaaa |
218 |
Q |
| |
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|||||||||||||| |
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| T |
34578229 |
gaaaatgaagaaaa |
34578242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 34594091 - 34594181
Alignment:
| Q |
309 |
acctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
399 |
Q |
| |
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|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
34594091 |
acctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatg |
34594181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 34593907 - 34593992
Alignment:
| Q |
92 |
gttagttaattaccattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggag |
177 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||| |
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| T |
34593907 |
gttaattaattaccattccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggag |
34593992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 34578398 - 34578470
Alignment:
| Q |
316 |
ccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcc |
388 |
Q |
| |
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||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
34578398 |
ccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcc |
34578470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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