View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_8 (Length: 408)
Name: NF13841_low_8
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 71 - 351
Target Start/End: Original strand, 29056506 - 29056788
Alignment:
| Q |
71 |
taccctactccaattgaacttgtttcataattcaaggtgggaagaag---atgtacattaagatttggaatgatagtagtattgatttttaagagcacta |
167 |
Q |
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| T |
29056506 |
taccctactctaattgaacttgtttcataattcaaggtgggaagaagcatatgtacattaagatttggaatgatagtagtattgatttttaagagcacta |
29056605 |
T |
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| Q |
168 |
gcatggaagcatatgtacgtcgtacatttttgaaattagtacaagccttttgttccctttacatccttttctttacagcagagataggtggtaccattgt |
267 |
Q |
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| T |
29056606 |
gcatggaagcatatgtacgtcgtacatttttgaaattagtacaagccttttgttccctttacatccttttctttacagcagagataggtggtaccattgt |
29056705 |
T |
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| Q |
268 |
tcaattatccgaaatcacaaaaacttcaatgcatcctctggccatcatgagagccagttatgaaaagtaataaccttttgaagg |
351 |
Q |
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| T |
29056706 |
tcaattatccgaaattac-aaaacttcaatgcatcctctggccatcatgagagccagttatgaaaagtaataaccttttgaagg |
29056788 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 20770997 - 20771025
Alignment:
| Q |
28 |
ccaatttgagggggttaatttaacttctt |
56 |
Q |
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| T |
20770997 |
ccaatttgagggggttaatttaacttctt |
20771025 |
T |
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