View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_low_9 (Length: 401)
Name: NF13841_low_9
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 23 - 389
Target Start/End: Complemental strand, 36327311 - 36326944
Alignment:
| Q |
23 |
tgccttaccctcatacttccaaagaggcctttgaacagaacatgcgcatgcccatgggacctgaatgtaaccctacaactgcaactggacttcttaatca |
122 |
Q |
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| T |
36327311 |
tgccttaccctcatacttccaaagaggcctttgaacagaacatgcgcatgcccatgggacctgaatgtaaccctacaactgcaactggacttcttaatca |
36327212 |
T |
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| Q |
123 |
gcctgaagtaagtttcactaaacaatt-ctcttgttaacttgagattcttcatttttcctttgttaagtatcatgttagtgccnnnnnnncaaagtaatt |
221 |
Q |
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| T |
36327211 |
gcctgaagtaagtttcactaaacaattcctcttgttaacttgaaattcttcatttttcctttgttaagtatcatgttagtgcctttttttcaaagtaatt |
36327112 |
T |
|
| Q |
222 |
aagaataatatatggactagctttctttttgagtgagaaaagcccttaattagatactattaatggattttagagggttctagtaccaaactaaattact |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327111 |
aagaataatatatggactagctttctttttgagtgagaaaagcccttaattggatactattaatggattttagagggttctagtaccaaactaaattact |
36327012 |
T |
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| Q |
322 |
tgggnnnnnnncagtaaagtatgtttgtgtaatttttgttttgtagctttcttgtaatgtaagtatat |
389 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327011 |
tgggaaaaaaacagtaaagtatgtttgtgtaatttttgttttgtagctttcttgtaatgtaagtatat |
36326944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 44365359 - 44365257
Alignment:
| Q |
35 |
atacttccaaagaggcctttgaacagaacatgcgcatgcccatgggacctgaatgtaaccctacaactgcaactggacttcttaatcagcctgaagtaag |
134 |
Q |
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| T |
44365359 |
atacttccaaagatgtctttcatcagagtatgcgtatgcccattggacctgaatctaacccgtcaactacatttggacctcttactcggcctgaagtaag |
44365260 |
T |
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| Q |
135 |
ttt |
137 |
Q |
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||| |
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| T |
44365259 |
ttt |
44365257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 52925298 - 52925226
Alignment:
| Q |
23 |
tgccttaccctcatacttccaaagaggcctttgaacagaacatgcgcatgcccatgggacctgaatgtaaccc |
95 |
Q |
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||||||| ||| ||||||||||||| | |||| | |||| |||||||||||||| |||||||||| |||||| |
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| T |
52925298 |
tgccttatccttatacttccaaagatgtctttcatcagagtatgcgcatgcccattggacctgaatctaaccc |
52925226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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