View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13842_high_15 (Length: 284)
Name: NF13842_high_15
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 3724318 - 3724068
Alignment:
| Q |
20 |
aatgaggcttcttgacttcattcgtagagaacaattttacctttcaccaacttattcaacatgttggttgaaaaacaaatacaattttagaataatttca |
119 |
Q |
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| T |
3724318 |
aatgaggcttcttgacttcattcgtagaaaacaattttacctttcaccaacttattcaacatgttggttgaaaaacaaatacaattttagaataatttca |
3724219 |
T |
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| Q |
120 |
tcgacaaatcattgcttttcaaagtttttctatactcaataatgctcattttggagcaaatattattatttgtagcattaagttgaatatttttattatt |
219 |
Q |
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| T |
3724218 |
tcgacaaatcattgcttttcaaagtttttctatactcaataatgctcattttggagcaaatattattatttgtagcattaagttgaatatttttattatt |
3724119 |
T |
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| Q |
220 |
ttaaaaagtcaaagtattttaactttagtccctttaaaatatgttattcat |
270 |
Q |
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| T |
3724118 |
ttaaaaagtcgaagtattttaacttcagtccctataaaagatgttattcat |
3724068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 3726187 - 3725944
Alignment:
| Q |
26 |
gcttcttgacttcattcgtagagaacaattttacctttcaccaacttat---tcaacatgttggttgaaaaacaaatacaattttagaataatttcatcg |
122 |
Q |
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| T |
3726187 |
gcttcttcacttccttcatagagaacaattttacccttcatcaacttatcattcaacgcgttggtagagcgacacatacaattttagaataattttgcta |
3726088 |
T |
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| Q |
123 |
acaaatcattgcttttcaaagtttttctatactcaataatgctcattttggagcaaatattattatttgtagcattaagttgaatatttttattatttta |
222 |
Q |
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| T |
3726087 |
acaaataattgattttcaaagtttttctctactcga-aatgctcattatagagcaaatattatcatttgaagcactaagctgaatatttttaatgttcta |
3725989 |
T |
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| Q |
223 |
aaaagtcaaagtattttaactttagtccctttaaaatatgttatt |
267 |
Q |
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| T |
3725988 |
aaaaatcaaggtattttaacttcagtctctataaaaggtgttatt |
3725944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 3721563 - 3721481
Alignment:
| Q |
130 |
attgcttttcaaagttttt-ctatactcaataatgctcattttggagcaaatattattatttgtagcattaagttgaatattt |
211 |
Q |
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| T |
3721563 |
attgattttcaaagttttttctctattcagttattctaattttggagcaaagattattatttttagcattaagttaaatattt |
3721481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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