View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13842_high_18 (Length: 242)
Name: NF13842_high_18
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 20624674 - 20624475
Alignment:
| Q |
15 |
gattatactacgatacatgatagtacttaaatnnnnnnncacctattagaaatcaactactgatccaaaattaatgcaatctttccttgctataggttat |
114 |
Q |
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| T |
20624674 |
gattatactacgatacgtgatagtacttaaataaaaaaacacctattagaaatcaactactgatccaaaattaatgtaatctttccttgctataggttat |
20624575 |
T |
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| Q |
115 |
gtttgtttaatggtttctcagtgtacctagagtcagcattaatttcttcagatttctttagaaaccattctgcttggccactggatatgacttctggata |
214 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20624574 |
gtttatttaatggtttttcagtgtacctagagtcagcattaatttcttcagatttctttagaaaccattctgcttggccactggatatgacttctggata |
20624475 |
T |
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