View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13842_high_23 (Length: 215)
Name: NF13842_high_23
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 5160497 - 5160308
Alignment:
| Q |
10 |
cagaacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtat |
109 |
Q |
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| T |
5160497 |
cagaatctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagtttttttatcttaccaattgatgaaggtat |
5160398 |
T |
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| Q |
110 |
atttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaatt |
199 |
Q |
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| T |
5160397 |
atttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaatt |
5160308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 5182739 - 5182553
Alignment:
| Q |
13 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
112 |
Q |
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| T |
5182739 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtactcaagttgtttcatcttaccaattgatgaaggtatatt |
5182640 |
T |
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| Q |
113 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaatt |
199 |
Q |
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| T |
5182639 |
tccttcaaagctattccatgaaaagttcaaatacttaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaatt |
5182553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 5196139 - 5195953
Alignment:
| Q |
13 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
112 |
Q |
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| T |
5196139 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattttgagagaagtccaagagttgaagttgtttcatcttaccaattgatgaaggtatatt |
5196040 |
T |
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| Q |
113 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaatt |
199 |
Q |
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| T |
5196039 |
tccttcaaagctattccatgaaaagttcaaataggtaacattaggaaggaatataccgatatcttttggaagcaaaccactcaaatt |
5195953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 5173400 - 5173252
Alignment:
| Q |
17 |
tgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatttcct |
116 |
Q |
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| T |
5173400 |
tgtggccagttgtttaggtaactcacctgagaaattattatgagagaggtcaaagtactcaagatttttcatcttaccaattgatgaaggtatatttcct |
5173301 |
T |
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| Q |
117 |
tcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaata |
165 |
Q |
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| T |
5173300 |
tcaaagctattccatgaaaagttcaaataggtaatacttggaaggaata |
5173252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 5214296 - 5214112
Alignment:
| Q |
13 |
aacctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatt |
112 |
Q |
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| T |
5214296 |
aacctgtggccagttgtttaggtaactcacctgagaaatgattatgagagaggtccaaggactcaagttttttcatcttaccaattgatgaaggtatatt |
5214197 |
T |
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| Q |
113 |
tccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaa |
197 |
Q |
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|||||||||| |||| ||||||| |||| | ||| |||| |||||||||| | ||| |||||||| || || ||||||||| |
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| T |
5214196 |
tccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttttggaagaaaaccacttaaa |
5214112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 4842125 - 4842304
Alignment:
| Q |
20 |
ggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagnnnnnnnatcttaccaattgatgaaggtatatttccttca |
119 |
Q |
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| T |
4842125 |
ggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtacttaagttttttcatcttacaaattgatgaaggtatatttccttca |
4842224 |
T |
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| Q |
120 |
aagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaatt |
199 |
Q |
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| T |
4842225 |
aagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttctggaagcaaaccactaaaatt |
4842304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 4856686 - 4856778
Alignment:
| Q |
107 |
tatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagcaacccacttaaatt |
199 |
Q |
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| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaatt |
4856778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 7142598 - 7142548
Alignment:
| Q |
91 |
taccaattgatgaaggtatatttccttcaaagctattccatgaaaagttca |
141 |
Q |
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| T |
7142598 |
taccaattgattaaggtatatttccttgaaagctattcaatgaaaagttca |
7142548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 4856621 - 4856676
Alignment:
| Q |
16 |
ctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaag |
71 |
Q |
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| T |
4856621 |
ctgtggccaattgttcaggtaactcacctgagaaatgattctgagagaggtccaag |
4856676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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