View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13842_high_5 (Length: 596)
Name: NF13842_high_5
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 579
Target Start/End: Complemental strand, 33613862 - 33613318
Alignment:
| Q |
16 |
aataagaagaaccaagagaaacacttgcaaacatgagaaataactacgttgatcctagttaccacatcgagagatccgtnnnnnnncaagggaaccagaa |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33613862 |
aataagaagaactaagagaaacacttgcaaacatgagaaataactatgttgatcctagttaccacatcgagagatccgtaaataaacaagggaaccagaa |
33613763 |
T |
|
| Q |
116 |
agaaatcgagcgagattggaggaaagaaagacgagcatcaagaagaaggagaaataacggaaagcgccaattagtatattaggttagattcatgaaagat |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
33613762 |
agaaatcgaacgagattggaggaaagaaagacgagcatcaagaagaaggagaaataacggaaagcgtcgattagtatattgggttagattcatgaaagac |
33613663 |
T |
|
| Q |
216 |
gaatccaaatcttgaaagatgaatataaatcttgaagcattatgtattgtttgtgttttccacccaattttaccattggattattatttgataaagagta |
315 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33613662 |
gaatccaaa--------------------tcttgaagcattatgtattgtttgtgttttccacccaattttaccattgcattattatttgataaagagta |
33613583 |
T |
|
| Q |
316 |
ttcctatatgtcatgaaattgattaaagtcaattatgtttcgacgcgttttagtaataaataaaaatagaagcaaatgaaaaacaat-atcatctaacgt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |||||||||||| |
|
|
| T |
33613582 |
ttcctatatgtcatgaaattgattaaagccaattatgtttcgacgcgttttagtaataaataaaaacataagcaaatgaaaaccaaccatcatctaacgt |
33613483 |
T |
|
| Q |
415 |
caaaaatagcatcacggttgaaaagcatccgtgatattttacgaaagacaaatttgctgcatatctttttccctaagcaaatttctgtcaaatatttagt |
514 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33613482 |
caaaaaaagtatcacggtggaaaagcatccgtgatattttacgaaagacaaattcgctgcatatctttttccctaagcaaatttctgtcaaatatttagt |
33613383 |
T |
|
| Q |
515 |
gtcaaatggttggttaaggattctaattttggaacctatatttggaaatttgtggttggttaagg |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33613382 |
gtcaaatggttggttaaggattctaattttggaacctatatttggaaatttgtggttggttaagg |
33613318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 522 - 565
Target Start/End: Complemental strand, 33613319 - 33613276
Alignment:
| Q |
522 |
ggttggttaaggattctaattttggaacctatatttggaaattt |
565 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33613319 |
ggttggttaaggattctaattttgcaacctatatttggaaattt |
33613276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University