View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13842_high_6 (Length: 496)

Name: NF13842_high_6
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13842_high_6
NF13842_high_6
[»] chr4 (27 HSPs)
chr4 (19-486)||(5789720-5790187)
chr4 (25-370)||(48242428-48242773)
chr4 (41-486)||(2821662-2822110)
chr4 (41-486)||(48312162-48312606)
chr4 (41-486)||(54482787-54483232)
chr4 (186-486)||(23642219-23642519)
chr4 (30-411)||(46145731-46146114)
chr4 (140-265)||(19735596-19735721)
chr4 (376-486)||(47419206-47419316)
chr4 (332-487)||(55725333-55725488)
chr4 (35-486)||(19755328-19755779)
chr4 (35-486)||(19784027-19784478)
chr4 (18-177)||(45472646-45472805)
chr4 (35-132)||(12697874-12697971)
chr4 (53-132)||(8361179-8361258)
chr4 (329-411)||(19735438-19735520)
chr4 (188-282)||(47685727-47685821)
chr4 (386-486)||(1828168-1828268)
chr4 (35-75)||(1828579-1828619)
chr4 (35-75)||(15740282-15740322)
chr4 (188-255)||(15740435-15740502)
chr4 (53-132)||(20002804-20002883)
chr4 (428-486)||(23647877-23647935)
chr4 (217-255)||(53810084-53810122)
chr4 (41-179)||(55725621-55725759)
chr4 (35-72)||(47418865-47418902)
chr4 (217-273)||(43127431-43127487)
[»] chr3 (28 HSPs)
chr3 (19-486)||(16178993-16179459)
chr3 (41-486)||(15312650-15313094)
chr3 (54-486)||(17097505-17097936)
chr3 (30-403)||(962874-963247)
chr3 (140-411)||(3141018-3141288)
chr3 (41-486)||(48569667-48570112)
chr3 (30-269)||(2755898-2756137)
chr3 (188-486)||(2364491-2364789)
chr3 (35-486)||(34332443-34332894)
chr3 (188-486)||(10323199-10323497)
chr3 (53-486)||(19890757-19891189)
chr3 (35-282)||(29523577-29523824)
chr3 (356-486)||(12341883-12342013)
chr3 (35-177)||(11203880-11204022)
chr3 (53-130)||(12342210-12342287)
chr3 (35-130)||(33496608-33496703)
chr3 (188-268)||(7032520-7032600)
chr3 (329-408)||(40930245-40930324)
chr3 (188-282)||(7312990-7313084)
chr3 (35-72)||(7312837-7312874)
chr3 (188-255)||(19920088-19920155)
chr3 (333-444)||(29523391-29523502)
chr3 (191-253)||(40930389-40930451)
chr3 (35-72)||(2364338-2364375)
chr3 (35-72)||(10323613-10323650)
chr3 (35-72)||(19920271-19920308)
chr3 (215-256)||(20531908-20531949)
chr3 (218-282)||(8943596-8943660)
[»] chr5 (27 HSPs)
chr5 (119-411)||(33169803-33170095)
chr5 (39-282)||(24407993-24408236)
chr5 (41-486)||(27795550-27795996)
chr5 (50-486)||(18089392-18089825)
chr5 (18-484)||(8299812-8300278)
chr5 (35-486)||(25857052-25857503)
chr5 (216-486)||(31641753-31642023)
chr5 (186-486)||(42513932-42514232)
chr5 (332-486)||(10777142-10777296)
chr5 (188-486)||(30731942-30732240)
chr5 (188-486)||(12825413-12825711)
chr5 (216-486)||(28535303-28535573)
chr5 (216-486)||(42928373-42928643)
chr5 (169-405)||(27165639-27165875)
chr5 (216-408)||(35983497-35983689)
chr5 (58-181)||(26072976-26073099)
chr5 (53-177)||(27767121-27767245)
chr5 (53-132)||(33385356-33385435)
chr5 (53-177)||(10776843-10776968)
chr5 (376-486)||(23238785-23238895)
chr5 (53-132)||(18359074-18359153)
chr5 (448-486)||(27165578-27165616)
chr5 (30-72)||(30732356-30732398)
chr5 (221-282)||(23878384-23878445)
chr5 (35-72)||(27117203-27117240)
chr5 (35-75)||(8228087-8228127)
chr5 (188-268)||(27117007-27117087)
[»] chr8 (24 HSPs)
chr8 (41-486)||(13879115-13879560)
chr8 (41-486)||(25090454-25090899)
chr8 (188-486)||(43270667-43270964)
chr8 (188-486)||(8300017-8300315)
chr8 (35-486)||(20824357-20824811)
chr8 (53-486)||(17699561-17699992)
chr8 (216-486)||(9922843-9923113)
chr8 (186-486)||(7924598-7924898)
chr8 (34-132)||(37434192-37434290)
chr8 (35-135)||(2170403-2170503)
chr8 (304-486)||(42177180-42177359)
chr8 (216-409)||(13396630-13396823)
chr8 (35-75)||(32266625-32266665)
chr8 (35-75)||(41665408-41665448)
chr8 (216-255)||(12134570-12134609)
chr8 (41-132)||(13200190-13200281)
chr8 (219-269)||(13200310-13200360)
chr8 (35-72)||(172164-172201)
chr8 (332-413)||(2170694-2170775)
chr8 (35-72)||(8299864-8299901)
chr8 (35-132)||(42177571-42177668)
chr8 (438-486)||(172667-172715)
chr8 (35-75)||(13396449-13396489)
chr8 (216-268)||(41665215-41665267)
[»] chr1 (13 HSPs)
chr1 (30-411)||(2491268-2491649)
chr1 (186-486)||(6050815-6051115)
chr1 (216-486)||(35541291-35541561)
chr1 (34-486)||(47622705-47623157)
chr1 (188-486)||(11908733-11909031)
chr1 (35-486)||(43388428-43388877)
chr1 (35-282)||(16917641-16917888)
chr1 (188-269)||(31779477-31779558)
chr1 (217-292)||(28358133-28358208)
chr1 (57-131)||(37191193-37191267)
chr1 (35-72)||(11909147-11909184)
chr1 (35-72)||(35541110-35541147)
chr1 (35-72)||(51052541-51052578)
[»] chr6 (19 HSPs)
chr6 (34-486)||(14372619-14373071)
chr6 (34-444)||(15958483-15958893)
chr6 (30-269)||(13937756-13937995)
chr6 (35-486)||(20882661-20883112)
chr6 (53-486)||(17573284-17573716)
chr6 (216-408)||(24767135-24767327)
chr6 (35-486)||(17605962-17606413)
chr6 (35-486)||(21629735-21630186)
chr6 (217-411)||(33185678-33185872)
chr6 (53-486)||(10576878-10577310)
chr6 (162-246)||(18682402-18682486)
chr6 (216-273)||(5041760-5041817)
chr6 (354-411)||(13938099-13938156)
chr6 (35-75)||(2553698-2553738)
chr6 (188-268)||(21168413-21168493)
chr6 (219-267)||(23065894-23065942)
chr6 (35-72)||(12734186-12734223)
chr6 (35-75)||(18651273-18651313)
chr6 (35-75)||(21168260-21168300)
[»] chr2 (13 HSPs)
chr2 (41-413)||(40176735-40177107)
chr2 (215-486)||(12645777-12646048)
chr2 (216-486)||(28252962-28253232)
chr2 (188-486)||(14439960-14440256)
chr2 (35-294)||(41207077-41207336)
chr2 (236-405)||(17764668-17764836)
chr2 (188-294)||(38604199-38604305)
chr2 (34-72)||(28252780-28252818)
chr2 (140-183)||(18154616-18154659)
chr2 (217-279)||(16315610-16315672)
chr2 (35-72)||(4552230-4552267)
chr2 (35-132)||(14439813-14439910)
chr2 (41-129)||(38604359-38604447)
[»] chr7 (13 HSPs)
chr7 (53-486)||(37254837-37255270)
chr7 (186-486)||(4937756-4938056)
chr7 (219-486)||(31422849-31423114)
chr7 (222-486)||(17720883-17721147)
chr7 (35-486)||(47877044-47877495)
chr7 (216-486)||(235066-235335)
chr7 (53-132)||(18532707-18532786)
chr7 (188-279)||(36363738-36363829)
chr7 (35-75)||(11277291-11277331)
chr7 (35-75)||(29968036-29968076)
chr7 (376-486)||(11276876-11276986)
chr7 (216-294)||(11277072-11277150)
chr7 (219-325)||(25619710-25619815)
[»] scaffold0034 (1 HSPs)
scaffold0034 (186-486)||(105471-105771)
[»] scaffold0161 (1 HSPs)
scaffold0161 (68-212)||(5911-6055)
[»] scaffold0472 (2 HSPs)
scaffold0472 (35-75)||(3313-3353)
scaffold0472 (386-486)||(3664-3764)
[»] scaffold0112 (1 HSPs)
scaffold0112 (216-282)||(15482-15548)
[»] scaffold0369 (1 HSPs)
scaffold0369 (35-72)||(11247-11284)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 5790187 - 5789720
Alignment:
Q  19 caggcgccacacaaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataag 118  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  5790187 caggcaccacgcaaaaatagatactttaagaggtacttgtttatgccaaattaactcagaattttgatgaagatggggctgttcttgcactgtcaataag 5790088  T
Q  119 tcatatacaccacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccc 218  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  5790087 tcatacacaccacggactgagtacccaccaatccggtccggtaaccaaagccacctgtcagaagaagattcctacaaagtaactgtaagtaaaagctccc 5789988  T
Q  219 tacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcac 318  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||  ||||    
T  5789987 tacactcctctaccaaatcttcctcccacgcctacaaacgatgacgccactgccatgcctccccaccaacctccacacctaagtcgaatatgttcatcac 5789888  T
Q  319 cgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |    
T  5789887 cgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacggaacatttccacaccaacaatcacgccaaaaatcaatattggct 5789788  T
Q  419 ccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |||||||  || |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5789787 ccatcccgcaccctcctactaacacacgacgcaaaccatccctccccaccctcgcctatcccatctct 5789720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 25 - 370
Target Start/End: Original strand, 48242428 - 48242773
Alignment:
Q  25 ccacacaaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatat 124  Q
    |||| |||||| |||||||||||||| || ||||||||||||||||||||   |||||||||| | |||||||||||| |||||  ||| |||||||||     
T  48242428 ccacgcaaaaacagatactttaagagatatctgtttatgccaaattaactttaaattttgatgtaaatggggttgttcctgcgccttcagtaagtcatac 48242527  T
Q  125 acaccacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacact 224  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||| | || ||||||||||  || ||||| || |||||||||     
T  48242528 acaccacggaccgagtacccaccattctggttcggtaaccaaagccacctgtcataagaagaatcttgcaaagtaatcgtgagtaatagttccctacacc 48242627  T
Q  225 cctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgat 324  Q
    |||||||||| |||||||||||  ||||||||||| | ||||||| ||| |||||||| |||||||||||||| ||   ||||||||| ||||||||||     
T  48242628 cctctaccaattcttcctcccaaacccacaaacgatgtcgccactgccacgcctccccgccaacctccacacccaacaagaacatgttcctcaccgtgac 48242727  T
Q  325 tggcttgttgacagccaagtcatataggcgtctaaaacgcacacac 370  Q
    || |||| | ||| |||||||||||||| |||||||||||||||||    
T  48242728 tgccttgctaacaaccaagtcatataggtgtctaaaacgcacacac 48242773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 41 - 486
Target Start/End: Complemental strand, 2822110 - 2821662
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| |||||||||||||| ||||| ||||||||   ||||||||||| ||| |||||||| |  | |||||| ||||||||||| ||| | || |  |    
T  2822110 acttttagaggtacctgtttgtgccagattaactccatattttgatgaatatgaggttgttcctatgatgtcaacaagtcatataccccatgaacagtat 2822011  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa---atc 237  Q
    | ||||||||| | ||||||||||| | ||| ||||||| |  | | ||||||||||  ||||| ||||  |   |||||||||||||||||||    ||    
T  2822010 agccaccaatcggatccggtaaccacacccatctgtcagtaacagattcctgcaaagagactgttagtattaaagccctacactcctctaccaattggtc 2821911  T
Q  238 ttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgaca 337  Q
     ||||||||| |||| || || |||||||||  ||| ||  |||||||| ||||||| || ||   ||||||||| || ||||||||||  || ||||      
T  2821910 ctcctcccacacccataagcggcgacgccaccaccacgctcccccaccatcctccacccccaacaagaacatgttccttaccgtgattgctttattgatg 2821811  T
Q  338 gccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaa 437  Q
    || |||||||| || || ||||| ||| ||||||||| |||| | |||||||||||||| ||||||||||| ||||  | ||||||||| || |||||      
T  2821810 gctaagtcataaagacgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgccaaaaatcggtatcagctccatcccccaccctcctcc 2821711  T
Q  438 taacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |||||||    |||||| | |||||||||||||||||||||||||||||    
T  2821710 taacacaatctgcaaaccaaccctccccaccctcgcctatcccatctct 2821662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 41 - 486
Target Start/End: Original strand, 48312162 - 48312606
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| ||| |||||||||| ||||| | ||||||   | |||||||||  || |||||||| |||| |||||||||||||||||| ||||| || || |    
T  48312162 acttttagatgtacctgtttgtgccagactaactccatactttgatgaatctgaggttgttcatgcgatgtcaataagtcatataccccacgaacagaat 48312261  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttc 240  Q
    | ||||||||| | |||  |||||| | ||| ||||||| |   || |||||||||   ||||| ||||| |   ||||||||||||||||||| || ||    
T  48312262 agccaccaatcggatccaataaccacacccatctgtcagtaacgaattcctgcaaatagactgttagtaataaagccctacactcctctaccaagtcctc 48312361  T
Q  241 ctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagcc 340  Q
    ||| ||| || | || || |||||||||| ||| ||| |||||||| ||||||| || ||   ||||||||| |||||||||||||  || ||||  ||     
T  48312362 ctcacacaccaataaccggcgacgccactgccacgcccccccaccatcctccacccccaacaagaacatgttcctcaccgtgattgatttattgatggct 48312461  T
Q  341 aagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataa 440  Q
    |||||||| || || ||||| ||| ||||||||| |||| | |||||||||||||| |||||||||||  |||  | ||||||||| || |||||  |||    
T  48312462 aagtcataaagtcgcctaaagcgctcacacaacggaaca-taccacaccaacaatctcgccaaaaatcgatatcagctccatcccccaccctcctcctaa 48312560  T
Q  441 cacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||   | ||||| | ||||| ||||||||||||||| |||||||    
T  48312561 cacaatccacaaaccaaccctctccaccctcgcctatctcatctct 48312606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 41 - 486
Target Start/End: Complemental strand, 54483232 - 54482787
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| |||||||||||||| ||||| | ||||||   | |||||||||  || |||||||| |||| |||||||||||||||||| ||||  ||  | |    
T  54483232 acttttagaggtacctgtttgtgccagactaactccatactttgatgaatctgaggttgttcatgcgatgtcaataagtcatataccccacaaacataat 54483133  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttc 240  Q
    | ||||||||| | |||  |||||| | ||| || |||| |    | ||||||||||  ||||| ||||| |   |||||||||||||||||||||| ||    
T  54483132 agccaccaatcggatccaataaccacacccatctatcagtaacggattcctgcaaagagactgttagtaataaacccctacactcctctaccaaatcctc 54483033  T
Q  241 ctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagcc 340  Q
    ||||||| |||| || || |||||||||| ||| ||  |||||||| ||||||| || ||   ||||||||| |||||||| ||||  || ||||  ||     
T  54483032 ctcccacacccataaccggcgacgccactgccacgctcccccaccatcctccacccccaacaagaacatgttcctcaccgtaattgatttattgatggct 54482933  T
Q  341 aagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataa 440  Q
    |||||||| ||  | ||||| ||| ||||||| | |||| | |||||||||||||| ||||||||||| ||||  | ||||||||| || |||||  |||    
T  54482932 aagtcataaagatgcctaaagcgctcacacaagggaacactaccacaccaacaatctcgccaaaaatcggtatcagctccatcccccaccctcctcctaa 54482833  T
Q  441 cacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||   | ||||| | | ||| |||||||||||||||||||||||    
T  54482832 cacaatccacaaaccaactctctccaccctcgcctatcccatctct 54482787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 486
Target Start/End: Complemental strand, 23642519 - 23642219
Alignment:
Q  186 agtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccacc 285  Q
    |||||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | |||||||| ||    
T  23642519 agtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcc 23642420  T
Q  286 aacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttcca 385  Q
     || ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | ||||| ||||| || ||||| |  | ||||| ||||    
T  23642419 cacatccacccccagcaggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctcca 23642320  T
Q  386 caccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctc 485  Q
    ||||||||||||||||||||||||||||  |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| |||||||||||||    
T  23642319 caccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccatctc 23642220  T
Q  486 t 486  Q
    |    
T  23642219 t 23642219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 411
Target Start/End: Original strand, 46145731 - 46146114
Alignment:
Q  30 caaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatg-aagatggggttgttcttgcgctgtcaataagtcatatacac 128  Q
    |||||||||| ||||| | ||| |||| ||| |||||||| |||||   ||||||||| || ||||| |||||| ||||  ||||| |  ||||| ||||    
T  46145731 caaaaatagacactttcaaaggcacctatttgtgccaaatcaactccatattttgatgtaacatggg-ttgttcctgcgaagtcaacatatcatacacac 46145829  T
Q  129 cacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctc 228  Q
    |||| || |  ||||||||  |||| ||  |||||||||||||||||||||||||  | ||||||||||||||||||||||| || ||||||||||||||    
T  46145830 cacgaaccgtatacccaccggtctgatctagtaaccaaagccacctgtcagaagaggaatcctgcaaagtaactgtaagtaatagttccctacactcctc 46145929  T
Q  229 taccaaatcttcctcccacgcccacaaacgacgac-gccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattgg 327  Q
    | |||| |||||||||||  ||||||| || ||||  || |  ||   || |||||||||||||||  || |  | ||||||||| || |||||||        
T  46145930 tgccaactcttcctcccaaacccacaagcggcgacacccccccccccccccccccaccaacctccaatcccacctggaacatgttcctaaccgtgacaac 46146029  T
Q  328 cttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaac-aatcacgccaaaaatcagt 411  Q
     |||||||| |  || ||| | || |||||||| |||||||| |||| ||||||||||||||||| ||||||||||||| |||||    
T  46146030 tttgttgactgttaaatcaaaaagccgtctaaatcgcacacaaaacggaacatttccacaccaacaaatcacgccaaaagtcagt 46146114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 19735721 - 19735596
Alignment:
Q  140 tacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatctt 239  Q
    |||||||| ||||| |||| ||||||||||||||||| ||||||  | || |||||||||||||||||||| || |||||||||||| ||||||| ||||    
T  19735721 tacccacctatctgatccgttaaccaaagccacctgttagaagatgaatcatgcaaagtaactgtaagtaatagttccctacactccgctaccaactctt 19735622  T
Q  240 cctcccacgcccacaaacgacgacgc 265  Q
    ||||| |  ||||||| || ||||||    
T  19735621 cctccaagacccacaagcggcgacgc 19735596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 376 - 486
Target Start/End: Original strand, 47419206 - 47419316
Alignment:
Q  376 aacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcct 475  Q
    ||||| ||||||||||||||||||||||||||||||||  |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| |||    
T  47419206 aacatctccacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacct 47419305  T
Q  476 atcccatctct 486  Q
    |||||||||||    
T  47419306 atcccatctct 47419316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 487
Target Start/End: Complemental strand, 55725488 - 55725333
Alignment:
Q  332 ttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactc 431  Q
    |||||||| ||||||||||| || ||||| |||  |||||| | |||| | |||||||||||||| ||||||||||| ||  ||| |||||| || || |    
T  55725488 ttgacagctaagtcatatagtcgcctaaagcgcttacacaaaggaacactaccacaccaacaatctcgccaaaaatctgttgtggctccatctcccaccc 55725389  T
Q  432 tcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctctg 487  Q
    || |  |||||||   ||||||| | ||||||||||||||||||||||||||||||    
T  55725388 tcatcctaacacaatccgcaaaccaaccctccccaccctcgcctatcccatctctg 55725333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 35 - 486
Target Start/End: Original strand, 19755328 - 19755779
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||||||||| ||||| |||||||||||||||||||||||   ||  |||||||  ||||| || ||||| | |||||  | |||||| || ||||| |    
T  19755328 atagatactttgagaggaacctgtttatgccaaattaactccatatgatgatgaaattggggctgctcttgtgatgtcagcatgtcatagaccccacgta 19755427  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    | || ||||||||   ||| |  |||||||||||||| ||||| |      | |||||||||| |||| | ||||| |   |||||||||||||||||||    
T  19755428 cagaatacccaccctcctgattaggtaaccaaagccatctgtctgtcactgattcctgcaaagaaactattagtaataaaaccctacactcctctaccaa 19755527  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttg 334  Q
     || |||||| | |||||||| || | |||||||  | | ||||||||||| || ||||| || ||   |||||| || || |  |  ||||  |||||     
T  19755528 ctcctcctcctaagcccacaaccgcctacgccaccgcaacgcctccccacccacatccacccccaacaagaacatattcctaaatgaaattgatttgtta 19755627  T
Q  335 acagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcc 434  Q
    |||  ||||||| | ||||| ||||| ||  ||||||  | ||||| ||| ||||||| ||||||||||||||| || |  |  ||||| || || ||||    
T  19755628 acattcaagtcaaaaaggcgcctaaaccggtcacacagtggaacatctccgcaccaacgatcacgccaaaaatcggtgtctgcaccatctcccaccctcc 19755727  T
Q  435 taataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  ||||||||  | ||||| ||||||| |||||||| ||||||||||||||    
T  19755728 tcctaacacacatcccaaaccatccctctccaccctcacctatcccatctct 19755779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 35 - 486
Target Start/End: Complemental strand, 19784478 - 19784027
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||||||||| ||||| |||||||||||||||||||||||   ||  |||||||  ||||| || ||||| | |||||  | |||||| || ||||| |    
T  19784478 atagatactttgagaggaacctgtttatgccaaattaactccatatgatgatgaaattggggctgctcttgtgatgtcagcatgtcatagaccccacgta 19784379  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    | || ||||||||   ||| |  |||||||||||||| ||||| |      | |||||||||| |||| | ||||| |   |||||||||||||||||||    
T  19784378 cagaatacccaccctcctgattaggtaaccaaagccatctgtctgtcactgattcctgcaaagaaactattagtaataaaaccctacactcctctaccaa 19784279  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttg 334  Q
     || |||||| | |||||||| || | |||||||  | | ||||||||||| || ||||| || ||   |||||| || || |  |  ||||  |||||     
T  19784278 ctcctcctcctaagcccacaaccgcctacgccaccgcaacgcctccccacccacatccacccccaacaagaacatattcctaaatgaaattgatttgtta 19784179  T
Q  335 acagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcc 434  Q
    |||  ||||||| | ||||| ||||| ||  ||||||  | ||||| ||| ||||||| ||||||||||||||| || |  |  ||||| || || ||||    
T  19784178 acattcaagtcaaaaaggcgcctaaaccggtcacacagtggaacatctccgcaccaacgatcacgccaaaaatcggtgtctgcaccatctcccaccctcc 19784079  T
Q  435 taataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  ||||||||  | ||||| ||||||| |||||||| ||||||||||||||    
T  19784078 tcctaacacacatcccaaaccatccctctccaccctcacctatcccatctct 19784027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 45472805 - 45472646
Alignment:
Q  18 acaggcgccacacaaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataa 117  Q
    |||| ||||| ||||  ||||| ||||| | ||| |||||||||||||||||||||||   ||||||||||| ||| ||| |||| || | |||||| ||    
T  45472805 acagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtggttcctgtgatgtcaacaa 45472706  T
Q  118 gtcatatacaccacggactgagtacccaccaatctggtccggtaaccaaagccacctgtc 177  Q
    ||||||||||||||| || |  || |||  |||||| ||||| ||||| | |||||||||    
T  45472705 gtcatatacaccacgaacagtataaccagaaatctgatccggcaaccacatccacctgtc 45472646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 12697874 - 12697971
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    ||||| ||||| | ||| |||||||||||||||||||| |    ||||||||||| ||| |||||||| || | |||||| |||||||||||||||||    
T  12697874 atagaaacttttaaaggaacctgtttatgccaaattaatttcatattttgatgaacatgaggttgttcctgtgatgtcaacaagtcatatacaccacg 12697971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 8361179 - 8361258
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | || ||| || ||||||||||||||    
T  8361179 acctgtttatgccaaattaactccatattttgatgaacatgaggttgttcctgtgatggcaacaaatcatatacaccacg 8361258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 411
Target Start/End: Complemental strand, 19735520 - 19735438
Alignment:
Q  329 ttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagt 411  Q
    ||||| |||||||| ||| | ||  ||||||||| |||| | |||| |||||||||||||||||||||| ||||||| |||||    
T  19735520 ttgtttacagccaaatcaaaaagctgtctaaaacacacataaaacggaacatttccacaccaacaatcatgccaaaagtcagt 19735438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 47685821 - 47685727
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctcccc 282  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||  || | ||||||| || ||||||||||    
T  47685821 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacagccgcccacgccacctcaatgcctcccc 47685727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 486
Target Start/End: Complemental strand, 1828268 - 1828168
Alignment:
Q  386 caccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctc 485  Q
    ||||||| |||||||||||| ||||| |  |  ||||| || || |||||  ||||||| ||| ||||| ||||||| |||||||| |||||||||||||    
T  1828268 caccaacgatcacgccaaaagtcagtgtctgcaccatctcccaccctcctcctaacacaagacccaaaccatccctcaccaccctcacctatcccatctc 1828169  T
Q  486 t 486  Q
    |    
T  1828168 t 1828168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 1828619 - 1828579
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  1828619 atagatactttgagaggaacctgtttatgccaaattaactc 1828579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 15740282 - 15740322
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  15740282 atagatactttgagaggaacctgtttatgccaaattaactc 15740322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 15740435 - 15740502
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaa 255  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| ||||||||    
T  15740435 tcctgcaaagaaactgttagtaataaagccctacactcctctaccaactcctcctcccaagcccacaa 15740502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 20002804 - 20002883
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    |||||||||||||||||||||||   |||||||| || ||| |||||||| || | |||||| | |||||| ||||||||    
T  20002804 acctgtttatgccaaattaactccatattttgattaacatgaggttgttcgtgtgatgtcaacatgtcataaacaccacg 20002883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 486
Target Start/End: Complemental strand, 23647935 - 23647877
Alignment:
Q  428 actctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||||||  ||||||| ||| ||||| ||||||| |||||||| ||||||||||||||    
T  23647935 actctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccatctct 23647877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 53810084 - 53810122
Alignment:
Q  217 cctacactcctctaccaaatcttcctcccacgcccacaa 255  Q
    |||||||||||||| || |||||||||||||||||||||    
T  53810084 cctacactcctctaacatatcttcctcccacgcccacaa 53810122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 55725759 - 55725621
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| ||||| || ||||||||||||||||||||   |||||||| || ||| |||||||| || | |||||| |  ||||| |||||| | || |  |    
T  55725759 acttttagaggaacttgtttatgccaaattaactccatattttgataaacatgaggttgttcctgtgatgtcaacatatcatacacaccatgaacagtat 55725660  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcag 179  Q
    | || ||| |||| ||||||||||| | |||||||||||    
T  55725659 atcctccagtctgatccggtaaccacaaccacctgtcag 55725621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 47418865 - 47418902
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  47418865 atagatactttgagagggacctgtttatgccaaattaa 47418902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 43127487 - 43127431
Alignment:
Q  217 cctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttcca 273  Q
    ||||||||||||||  || |||||||||||| |||||||||  | ||||||||||||    
T  43127487 cctacactcctctagtaactcttcctcccacacccacaaactcctacgccacttcca 43127431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 16178993 - 16179459
Alignment:
Q  19 caggcgccacacaaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataag 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | | |||||| |||||||||||||||||||||    
T  16178993 caggcgccacgcaaaaatagatactttaagaggtacctgtttatgccaaattaactctaaattttgacgtaaatggggctgttcttgcgctgtcaataag 16179092  T
Q  119 tcatatacaccacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccc 218  Q
    ||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  16179093 tcatacacaccacagaccgagaacccaccaatctggtccggtaaccaaagccacctgtcagaagaagagtcctgcaaagtaaccgtaagtaaaagctccc 16179192  T
Q  219 tacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcac 318  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| ||  |||||||||||||| ||||| || |||||||||||||||||| |||||    
T  16179193 tacactcctctaccaattctccctcccacgcccacaaacgacgacgcaaccgccatgcctccccacgaaccttcatacctaagtcgaacatgttcctcac 16179292  T
Q  319 cgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggat 418  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||||||| |||||| | |||| ||||| |||||| ||| |||||||||||||||||||||    
T  16179293 cgtgactgg-ttgttgacagccaagtcatatagacgtctaaaacgcaaacacaaaggaacaattccataccaactatcgcgccaaaaatcagtattggat 16179391  T
Q  419 ccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |||||||| || |||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  16179392 ccatcccccaccctcctactaacacacgacacaaaccatctctccccaccctcgcctatcccatctct 16179459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 486
Target Start/End: Original strand, 15312650 - 15313094
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||| | |||||  ||||| |||| ||||| ||||||||| |||||||  || ||||    
T  15312650 acttttagaggtacctgtttatgccaaattaactccaaattttgatgtaaatgggtatgttcctgcgatgtcagtaagtcatacacaccacataccgagt 15312749  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttc 240  Q
    |||||||| |||| || |||||| |||||||||||||||||||| | ||||||||||||||||| || || || |||||||  ||||||||||| ||||     
T  15312750 acccaccattctgatctggtaactaaagccacctgtcagaagaagattcctgcaaagtaactgtgagaaatagttccctac--tcctctaccaattcttt 15312847  T
Q  241 ctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagcc 340  Q
    ||| ||  ||||||||||||| ||||||| ||| |||||||| |||||||||||||| ||   ||||||||| || ||||||| |   ||||||||||||    
T  15312848 ctctcaaacccacaaacgacggcgccactgccacgcctcccctccaacctccacacccaacaagaacatgttccttaccgtgactactttgttgacagcc 15312947  T
Q  341 aagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactc-tcctaata 439  Q
    || |||||||| |||||||||||| ||||||||| |||||| |||||||||| ||||| |||||||||||||| || ||||||||| || | | ||  ||    
T  15312948 aattcatatagtcgtctaaaacgctcacacaacggaacattaccacaccaactatcacaccaaaaatcagtatcggctccatcccccaccctttctccta 15313047  T
Q  440 acacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  15313048 acacacgacgcaaaccatccctccccaccctcgcctatctcatctct 15313094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 54 - 486
Target Start/End: Complemental strand, 17097936 - 17097505
Alignment:
Q  54 cctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatctg 153  Q
    ||||||||||||||||||||||   ||||||||| | |||||||||||| |||| |||||| |||||||| ||||||||||| | |||||||||| ||||    
T  17097936 cctgtttatgccaaattaactccacattttgatgtaaatggggttgttcatgcgatgtcaacaagtcatacacaccacggaccgtgtacccaccagtctg 17097837  T
Q  154 gtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccac 253  Q
     || ||||||||||||||||||| ||||||| |||| |||||||||||||| ||||| || | |||||||||||||||||| ||||| || || ||||||    
T  17097836 atcaggtaaccaaagccacctgttagaagaagagtcatgcaaagtaactgtgagtaatagtttcctacactcctctaccaactcttcttctcaagcccac 17097737  T
Q  254 aaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggc 353  Q
    |||||||| ||||||| ||| ||| |||  |||||||||| ||| ||   ||||||||| || ||||||| |   |||||||||||||| |||||||| |    
T  17097736 aaacgacggcgccactaccacgcc-ccctgccaacctccaaacccaacaagaacatgttccttaccgtgactactttgttgacagccaaatcatatagcc 17097638  T
Q  354 gtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaa 453  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||  | ||| ||||| || |  ||  ||||||||||| ||||    
T  17097637 gtctaaaacgctcacacaacggaacattaccacaccaacaatcacgccaaaaatcagtatcagctccgtcccccacccgtctcctaacacacgacacaaa 17097538  T
Q  454 ctatccctccccaccctcgcctatcccatctct 486  Q
    | | |||||||||||||||||||||||||||||    
T  17097537 ccacccctccccaccctcgcctatcccatctct 17097505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 963247 - 962874
Alignment:
Q  30 caaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatg-aagatggggttgttcttgcgctgtcaataagtcatatacac 128  Q
    |||||||||| ||||| | ||| |||||||| |||||||| |||||   ||||||||| || ||||| |||||| ||||  ||||  |  ||||| ||||    
T  963247 caaaaatagacactttcaaaggcacctgtttgtgccaaatcaactccatattttgatgtaacatggg-ttgttcctgcgaagtcagcatatcatacacac 963149  T
Q  129 cacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctc 228  Q
    |||| || |  ||||||||| |||| || ||||||||||||||||||||||||||  | ||||||||||||||||||||||| |  ||||||||||||||    
T  963148 cacgaaccgtatacccaccagtctgatctggtaaccaaagccacctgtcagaagaggaatcctgcaaagtaactgtaagtaataattccctacactcctc 963049  T
Q  229 taccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggc 328  Q
    |||||| |||||||||||  ||||||| || |||||||||| ||| ||| ||||||||||||||| ||| || | ||||||||| || | |||||         
T  963048 taccaattcttcctcccaaacccacaagcggcgacgccactgccacgcccccccaccaacctccaaacccaactggaacatgttcctaatcgtgacaact 962949  T
Q  329 ttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaa 403  Q
    |||||||| | ||| ||| | || |||||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  962948 ttgttgactgtcaaatcaaaaagccgtctaaatcgcacacaaaacggaacatttccacaccaacaatcacgccaa 962874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 140 - 411
Target Start/End: Original strand, 3141018 - 3141288
Alignment:
Q  140 tacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatctt 239  Q
    ||||||||| |||  ||||||||||||||||||||| |||||||  | ||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  3141018 tacccaccagtctaatccggtaaccaaagccacctgccagaagaggaatcctgcaaagtaactgtaagtaatagttccctacactcctctaccaactctt 3141117  T
Q  240 cctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagc 339  Q
    |||||||  | ||||| || | |||||||| |||   | ||||||||||||||| ||| || | ||||||||| || || ||||     |||||||| |     
T  3141118 cctcccaaactcacaagcggcaacgccactgccacatc-ccccaccaacctccaaacccaactggaacatgttcctaactgtgacaactttgttgactgt 3141216  T
Q  340 caagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagt 411  Q
    ||| ||| | || |||||||| |||||||| || | |||||||||||||||||||||||||||||| |||||    
T  3141217 caaatcaaagagccgtctaaatcgcacacaaaatggaacatttccacaccaacaatcacgccaaaactcagt 3141288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 41 - 486
Target Start/End: Complemental strand, 48570112 - 48569667
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| ||||||| |||||| ||| | ||||||||   ||||||||||| ||| |||||||| || | |||||| ||||||||||| ||||| || |  |    
T  48570112 acttttagaggtatctgtttgtgctagattaactccatattttgatgaatatgaggttgttcatgtgatgtcaacaagtcatataccccacgaacagtat 48570013  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttc 240  Q
    | ||||||||| | ||||||||||| | ||| ||||||| |    | ||||||||||  ||||| ||||  |   ||||||||||||||||||| || ||    
T  48570012 agccaccaatcggatccggtaaccacacccatctgtcagtatcggattcctgcaaagagactgttagtagtaaagccctacactcctctaccaagtcctc 48569913  T
Q  241 ctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagcc 340  Q
    ||||||| |||| ||||| |||||||||| ||| ||  |||||||| |||| || || ||   ||||||||| || ||||||||||  || ||||| ||     
T  48569912 ctcccacacccataaacggcgacgccactgccacgctcccccaccatcctcaacccccaacaagaacatgttccttaccgtgattgctttattgacggct 48569813  T
Q  341 aagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataa 440  Q
    |||||||| || ||  |||| ||| ||||||||  |||| | ||||||||||||||  |||||||||| ||||  | ||||||||| || |||||  |||    
T  48569812 aagtcataaagacgcataaagcgctcacacaacagaacactaccacaccaacaatcttgccaaaaatcggtatcagctccatcccccaccctcctcctaa 48569713  T
Q  441 cacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||   | ||||| | |||||||||||||| ||||||||||||||    
T  48569712 cacaatccacaaaccaaccctccccaccctcacctatcccatctct 48569667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 2755898 - 2756137
Alignment:
Q  30 caaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatg-aagatggggttgttcttgcgctgtcaataagtcatatacac 128  Q
    |||| ||||| ||||| | |||||||||||| |||||||| |||||   ||||||||| || ||||| |||||| |||| |||||| |  ||||| ||||    
T  2755898 caaatatagacactttcaaaggtacctgtttgtgccaaatcaactccatattttgatgtaacatggg-ttgttcctgcgatgtcaacatatcatacacac 2755996  T
Q  129 cacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctc 228  Q
    |||| |  |  ||||||||| |||| |||||||||||||||||||||||||||||  | ||||||||||||| ||||||||| || ||||||||||||||    
T  2755997 cacgaatcgtatacccaccagtctgatccggtaaccaaagccacctgtcagaagaggaatcctgcaaagtaagtgtaagtaatagttccctacactcctc 2756096  T
Q  229 taccaaatcttcctcccacgcccacaaacgacgacgccact 269  Q
    ||| || |||||||||||  ||||||| || ||||||||||    
T  2756097 tacaaactcttcctcccaaacccacaagcggcgacgccact 2756137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 486
Target Start/End: Original strand, 2364491 - 2364789
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaa 287  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | |||||||| || |    
T  2364491 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccca 2364590  T
Q  288 cctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccaca 387  Q
    | ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | ||||| ||||| || ||||| |  | |||||  |||||    
T  2364591 catccacccccagcaggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatcaccaca 2364690  T
Q  388 ccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||||||||||||||||||||||||  |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| ||||||||||||||    
T  2364691 ccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccatctct 2364789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 486
Target Start/End: Complemental strand, 34332894 - 34332443
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||||||||| ||||| |||||||||||||||||||||||   ||| ||||| |  ||||| || || || | |||||  | ||||||  | ||||| |    
T  34332894 atagatactttgagaggaacctgtttatgccaaattaactccatattatgatgtaactggggctgctcctgtgatgtcagcatgtcataggctccacgta 34332795  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    |  | |||||||||  ||| |  |||||||||||||| ||||| ||     | |||||||||| |||||| ||||| |   |||||||||||||||||||    
T  34332794 cataatacccaccatcctgattaggtaaccaaagccatctgtctgacactgattcctgcaaagaaactgttagtaataaaaccctacactcctctaccaa 34332695  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttg 334  Q
     || |||||||| |||||||| || | |||||||  | | ||||||||||| |  ||||| || ||   |||||| || || || | |||||  ||| |     
T  34332694 ctcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacccatgtccacccccaacaagaacatattcctaactgagattgatttgata 34332595  T
Q  335 acagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcc 434  Q
    |||  ||||||| | ||||| ||||| || |||||||  | ||||||||||||||||| ||||||||||||||| |  |  |  ||||| || || ||||    
T  34332594 acattcaagtcaaaaaggcgcctaaaccggacacacagtggaacatttccacaccaacgatcacgccaaaaatctgagtctgcaccatctcccaccctcc 34332495  T
Q  435 taataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  ||||||||| | ||||| ||||||| |||||||| ||||||||||||||    
T  34332494 tcctaacacacgtcccaaaccatccctctccaccctcacctatcccatctct 34332443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 486
Target Start/End: Complemental strand, 10323497 - 10323199
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaa 287  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | |||||||  | | |||||||| || |    
T  10323497 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccgccca 10323398  T
Q  288 cctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccaca 387  Q
    | ||||| || |    |||||| || || || | |||||  ||||  |||| |||| || | |||||   ||| || ||||| |  | ||||| ||||||    
T  10323397 catccacccccagcaggaacatattcctaactgagattgaattgtgaacagacaagccaaaaaggcgcggaaaccggacacaaagaggaacatctccaca 10323298  T
Q  388 ccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||||||||||||||||||||||||  |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| ||||||||||||||    
T  10323297 ccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccatctct 10323199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 53 - 486
Target Start/End: Original strand, 19890757 - 19891189
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatct 152  Q
    |||||||||||||| ||||||||   ||||||||||| ||| |||| ||| || | |||||| | ||||||||||||||| || |  || || | |||||    
T  19890757 acctgtttatgccagattaactccatattttgatgaacatgaggttattcctgtgatgtcaacatgtcatatacaccacgaacagtataacctctaatct 19890856  T
Q  153 ggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgccca 252  Q
    | |||| |||||| | ||||||||| |     || ||||||||||  ||||| ||||| |  |||| |||||| |||||||  || ||||||||| ||||    
T  19890857 gatccgataaccacatccacctgtctgtttctaattcctgcaaagagactgttagtaataaatccccacactcttctaccaggtcctcctcccacaccca 19890956  T
Q  253 caaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatatagg 352  Q
     ||| |||| ||||||| ||| ||| |||||||| ||||||| || ||   ||||||||| |||||  |||||   || |||||||| |  || |||||     
T  19890957 taaatgacgtcgccactgccacgcc-ccccaccatcctccacccccaaccagaacatgttcctcacaatgattactttattgacagctagatcgtatagc 19891055  T
Q  353 cgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaa 452  Q
    || ||||| ||| |||||| || |||| | |||||||||||||| | | |||||||  | | || ||||||||| || |||||  |||||||    ||||    
T  19891056 cgcctaaatcgcgcacacagcggaacactaccacaccaacaatctcacaaaaaatcgatttcggctccatcccccaccctcctcctaacacaacctgcaa 19891155  T
Q  453 actatccctccccaccctcgcctatcccatctct 486  Q
    || | || ||| ||||||||| ||||||||||||    
T  19891156 accaaccttcctcaccctcgcttatcccatctct 19891189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 282
Target Start/End: Complemental strand, 29523824 - 29523577
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| ||||||||||||||||| |    
T  29523824 atagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacaagtcatatacaccacgaa 29523725  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    | |  || |||  |||||| ||||  ||||| | |||||| || |     |  ||||||||||||||||| ||||| |  |||||||||||  ||| |||    
T  29523724 cagtataaccagaaatctgatccgacaaccacaaccacctatctgtttctatttcctgcaaagtaactgtcagtaataaatccctacactctactagcaa 29523625  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctcccc 282  Q
     || ||||||||  |||| |||| ||||||||||| ||| ||| ||||    
T  29523624 ttcctcctcccatacccataaacaacgacgccactgccacgccccccc 29523577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 486
Target Start/End: Complemental strand, 12342013 - 12341883
Alignment:
Q  356 ctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaact 455  Q
    ||||||||||||||||||| |||| | |||||||||||||| ||||||||||  ||||  | ||||||||| || |||||  |||||||    | ||||     
T  12342013 ctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaaaattggtatcagctccatcccccaccctcctcttaacacaacctgtaaacc 12341914  T
Q  456 atccctccccaccctcgcctatcccatctct 486  Q
    | |||||||||||||| ||||||||||||||    
T  12341913 agccctccccaccctcacctatcccatctct 12341883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 11203880 - 11204022
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| || |||||||||||||| |    
T  11203880 atagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacaaatcatatacaccacgaa 11203979  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtc 177  Q
    | |  || |||  |||||| ||||| ||||| | |||||||||    
T  11203980 cagtataaccagaaatctgatccggcaaccacatccacctgtc 11204022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 12342287 - 12342210
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacacca 130  Q
    |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| |||||||||||||||    
T  12342287 acctgtttatgccaaattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacaagtcatatacacca 12342210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 33496608 - 33496703
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacacca 130  Q
    ||||| ||||| | ||| |||||||||||||||||||||||   || |||||||| ||| |||||||| || | |||||| |||||||||||||||    
T  33496608 atagaaacttttaaaggaacctgtttatgccaaattaactccatatattgatgaacatgaggttgttcctgtgatgtcaacaagtcatatacacca 33496703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 7032520 - 7032600
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccac 268  Q
    |||||||| |||||||| ||||| |   ||||| ||||||||||||| ||||||||||| ||||||||||| | |||||||    
T  7032520 tcctgcaatgtaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagcccacaaacgcctacgccac 7032600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 408
Target Start/End: Complemental strand, 40930324 - 40930245
Alignment:
Q  329 ttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatc 408  Q
    ||||| |||||||||||||| ||||| ||||||||  ||||||| | ||||| | | |||||||||||| ||||||||||    
T  40930324 ttgttcacagccaagtcataaaggcgactaaaacggtcacacaatggaacatatacgcaccaacaatcatgccaaaaatc 40930245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 7312990 - 7313084
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctcccc 282  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | ||||||||    
T  7312990 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctcccc 7313084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 7312837 - 7312874
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  7312837 atagatactttgagaggtacctgtttatgccaaattaa 7312874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 19920155 - 19920088
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaa 255  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| ||||||||    
T  19920155 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaa 19920088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 444
Target Start/End: Complemental strand, 29523502 - 29523391
Alignment:
Q  333 tgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactct 432  Q
    ||||||| || ||||| || || ||||||||||||||||||| | || | |||||||||||||| ||| | ||||| ||||  | ||||||||| || ||    
T  29523502 tgacagctaaatcataaagccgcctaaaacgcacacacaacggagcactaccacaccaacaatctcgcaacaaatcggtatcagctccatcccccaccct 29523403  T
Q  433 cctaataacaca 444  Q
    |||  |||||||    
T  29523402 cctcttaacaca 29523391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 40930451 - 40930389
Alignment:
Q  191 tgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccac 253  Q
    ||||||| |||||| ||||| |   ||||||||||||||||||| ||||||||||| ||||||    
T  40930451 tgcaaagaaactgttagtaataaaaccctacactcctctaccaactcttcctcccaagcccac 40930389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 2364338 - 2364375
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  2364338 atagatactttgagagggacctgtttatgccaaattaa 2364375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 10323650 - 10323613
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  10323650 atagatactttgagagggacctgtttatgccaaattaa 10323613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 19920308 - 19920271
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  19920308 atagatactttgagaggaacctgtttatgccaaattaa 19920271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 20531949 - 20531908
Alignment:
Q  215 tccctacactcctctaccaaatcttcctcccacgcccacaaa 256  Q
    |||||||||| ||||||||| |||||||||||||||| ||||    
T  20531949 tccctacacttctctaccaactcttcctcccacgcccccaaa 20531908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 8943596 - 8943660
Alignment:
Q  218 ctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctcccc 282  Q
    ||||||||| ||  |||||||||||||||||||||||| | ||| | |||||||||  |||||||    
T  8943596 ctacactccgcttacaaatcttcctcccacgcccacaacctacgtctccacttccacacctcccc 8943660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 119 - 411
Target Start/End: Original strand, 33169803 - 33170095
Alignment:
Q  119 tcatatacaccacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccc 218  Q
    ||||| |||||||| || |  ||||||||| |||| || ||||||||||||||||||||||||||  | ||||||||||||||||||||||| |  ||||    
T  33169803 tcatacacaccacgaaccgtatacccaccagtctgatctggtaaccaaagccacctgtcagaagaggaatcctgcaaagtaactgtaagtaataattccc 33169902  T
Q  219 tacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcac 318  Q
    |||||||||||||||| || ||||||||  ||||||| || || ||||||| ||| ||| ||||||||||||||| ||| || | ||||||||| || ||    
T  33169903 tacactcctctaccaactcgtcctcccaaacccacaagcggcgtcgccactgccacgcccccccaccaacctccaaacccaactggaacatgttcctaac 33170002  T
Q  319 cgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagt 411  Q
    |||||     |||||||| | ||| ||| | || |||||||| |||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  33170003 cgtgacaactttgttgactgtcaaatcaaaaagccgtctaaatcgcacacaaaacggaacatttccacaccaacaatcacgccaaaagtcagt 33170095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 24407993 - 24408236
Alignment:
Q  39 atactttaagaggtacctgtttatgccaaattaactcagaattttgatg-aagatggggttgttcttgcgctgtcaataagtcatatacaccacggactg 137  Q
    ||||||| | ||||||||||||||||||||| |||||   | ||||||| || || ||||||||| |||| |||||| |  ||||| |||||||| || |    
T  24407993 atactttcaaaggtacctgtttatgccaaatcaactccatactttgatgtaacat-gggttgttcctgcgatgtcaacatatcatacacaccacgaaccg 24408091  T
Q  138 agtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatc 237  Q
      |||||||||||||| |||||||||||||||||||||||||||||  | ||||||||||||||||||||||| || |||||||||||||||||||| ||    
T  24408092 tatacccaccaatctgatccggtaaccaaagccacctgtcagaagaggaatcctgcaaagtaactgtaagtaatagttccctacactcctctaccaactc 24408191  T
Q  238 ttcctcccacgcccacaaacgacgacgccacttccatgcctcccc 282  Q
    ||||||||| |||||||| ||||||||||||| ||| ||| ||||    
T  24408192 ttcctcccaagcccacaagcgacgacgccactaccacgccccccc 24408236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 41 - 486
Target Start/End: Original strand, 27795550 - 27795996
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| |||||||||||||| ||||| | ||||||   | || ||||||  || |||||||| |||| |||||||||||||||||| ||||| || || |    
T  27795550 actttgagaggtacctgtttgtgccagactaactccatacttggatgaatctgaggttgttcatgcgatgtcaataagtcatataccccacgaacagaat 27795649  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttc 240  Q
    | ||||||||| |||||  |||||| | ||| || |||| |    | |||| ||||| |||||| ||||| |   ||||||||||||||||||| || ||    
T  27795650 agccaccaatcgggtccaataaccacacccatctatcagtaacggattcctccaaagaaactgttagtaataaagccctacactcctctaccaagtcctc 27795749  T
Q  241 ctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagcc 340  Q
    ||||||| |||| || || |||||||||| ||| ||  |||||||| ||||||| |||||   ||||||||| ||| |||||||||  || | || |||     
T  27795750 ctcccacacccataatcggcgacgccactgccacgctcccccaccatcctccacccctaacaagaacatgttcctcgccgtgattgatttatggatagct 27795849  T
Q  341 aagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataa 440  Q
    |||||||| || || ||||| ||| ||||||||| |||| | |||||||||||||| ||||||||||||||||  | ||||||||| || |||||  |||    
T  27795850 aagtcataaagacgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgccaaaaatcagtatcagctccatcccccaccctcctcctaa 27795949  T
Q  441 cacacgacgcaaactatccctccccaccctcgc-ctatcccatctct 486  Q
    ||||   | ||||| | ||||| |||||||||| |||||||||||||    
T  27795950 cacaatccacaaaccaaccctctccaccctcgcgctatcccatctct 27795996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 50 - 486
Target Start/End: Complemental strand, 18089825 - 18089392
Alignment:
Q  50 ggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaa 149  Q
    ||||||||||| ||||||||||||||  ||||||| |||| | |||||||||| | | ||||||| | |||||| ||||||| ||| | |||||| |||     
T  18089825 ggtacctgtttgtgccaaattaactccaaattttgttgaataaggggttgttcctacactgtcaacatgtcatacacaccacagaccgtgtacccgccac 18089726  T
Q  150 tctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgc 249  Q
    |||| ||||| ||||| |||||| |||||||||||   |||||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||| ||    
T  18089725 tctgatccggcaaccacagccacatgtcagaagaatcatcctgcaatgtaactgtaagtaaaagatccctacactcctctatcaacttttcctcccaagc 18089626  T
Q  250 ccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatat 349  Q
    |||||| || ||  | |||| ||| ||| |||| ||||||| || ||| |    |||||| || || |||||||     || ||||||| ||| |||||     
T  18089625 ccacaaccgtcggtggcactgccaagcc-cccctccaaccttcaaacccatcaggaacatattcctaaccgtgaccactttattgacagacaaatcataa 18089527  T
Q  350 aggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacg 449  Q
    || || ||||||||  || ||||||||||||| |||||| ||||||||||||||||||||||||  | |||||| || ||    |   |||||||||||     
T  18089526 agccgcctaaaacgatca-acaacgaaacattaccacactaacaatcacgccaaaaatcagtataagctccatcacccacctgacgcctaacacacgaca 18089428  T
Q  450 caaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||| | |||| |||||||||||||| |||||||||    
T  18089427 caaaccacccct-cccaccctcgcctaacccatctct 18089392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 484
Target Start/End: Complemental strand, 8300278 - 8299812
Alignment:
Q  18 acaggcgccacacaaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataa 117  Q
    |||| ||||| ||||  ||||| ||||| | ||| |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| |     
T  8300278 acagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacag 8300179  T
Q  118 gtcatatacaccacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctcc 217  Q
    ||||||| ||||||| || |  || |||  |||||| ||||| ||||| | |||||||||||      | ||||||||||| ||||| ||||| |  |||    
T  8300178 gtcatatgcaccacgaacagtataaccagaaatctgatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatcc 8300079  T
Q  218 ctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactca 317  Q
    ||||||||  ||| ||| || ||||||||  |||| |||||||||||||||| ||| ||| ||||| |  ||||||| || ||    |||||||| | ||    
T  8300078 ctacactctactaacaattcctcctcccatacccataaacgacgacgccactgccacgcccccccatctccctccacccccaacaaaaacatgttccgca 8299979  T
Q  318 ccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattgga 417  Q
    | || ||    || |||||||| || ||||| || || ||||||||||||||||| | |||| | |||||||||||||| ||||||||||| ||||  |     
T  8299978 ctgtaataacattattgacagctaaatcataaagccgcctaaaacgcacacacaatggaacactgccacaccaacaatcgcgccaaaaatcggtatcagc 8299879  T
Q  418 tccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatct 484  Q
    ||||||||| || |||||  |||||||    | |||| |||||||||||||||| ||||||||||||    
T  8299878 tccatcccccaccctcctcctaacacaacctgaaaaccatccctccccaccctcacctatcccatct 8299812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 35 - 486
Target Start/End: Complemental strand, 25857503 - 25857052
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| |||||||||||||||||||||||   ||||||||||| | | |||||||| || | |||||| ||||||||| ||||||| |    
T  25857503 atagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacaagaggttgttcctgtgatgtcaacaagtcatatgcaccacgaa 25857404  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    | |  || |||  |||||| ||||| || || | |||||||||||      | ||||||||||| ||||| ||||| |  |||||||||||  ||| |||    
T  25857403 cagtataaccagaaatctgatccggcaatcacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccctacactctactaacaa 25857304  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttg 334  Q
     || ||||||||  |||| |||||||||||||||| ||| ||| ||||| |  ||||||| || ||    || ||||| | ||| || ||    || |||    
T  25857303 ttcctcctcccatacccataaacgacgacgccactgccacgcccccccatctccctccacccccaacaaaaatatgttccgcactgtaataacattattg 25857204  T
Q  335 acagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcc 434  Q
    ||||| || ||||| || || ||||||||||||||||||| |||| | |||||||||||||| ||||||||||| ||||  | ||||||||| || ||||    
T  25857203 acagctaaatcataaagccgcctaaaacgcacacacaacggaacactgccacaccaacaatcgcgccaaaaatcggtatcagctccatcccccaccctcc 25857104  T
Q  435 taataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  |||||||    | |||| |||||||||||||||| ||||||||||||||    
T  25857103 tcctaacacaacctgaaaaccatccctccccaccctcacctatcccatctct 25857052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 216 - 486
Target Start/End: Original strand, 31641753 - 31642023
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    ||||| ||||||||||||| ||||||||||| |||||||| || | ||||||| || | ||||||||||| |||||||| || |    ||||||||| ||    
T  31641753 ccctaaactcctctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccaccgacctccacccccatcaagaacatgttcct 31641852  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattg 415  Q
     || | |||||| ||||| |||| ||||||||| ||||| ||||| ||  ||||||| | ||||||||||||||||||||| ||||||||||| ||||      
T  31641853 aacagagattggtttgttcacagtcaagtcataaaggcgactaaaccggtcacacaaaggaacatttccacaccaacaatcccgccaaaaatctgtatct 31641952  T
Q  416 gatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  || || || || |||||  ||||||| ||| ||||| | ||||| |||||||| ||||||||||||||    
T  31641953 gcaccgtctcccaccctcctcctaacacaagacccaaaccaaccctctccaccctcacctatcccatctct 31642023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 186 - 486
Target Start/End: Original strand, 42513932 - 42514232
Alignment:
Q  186 agtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccacc 285  Q
    |||||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | |||||||| ||    
T  42513932 agtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccccc 42514031  T
Q  286 aacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttcca 385  Q
     || ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | ||||| ||||| || ||||| |  | ||||| ||||    
T  42514032 cacatccacccccagaaggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctcca 42514131  T
Q  386 caccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctc 485  Q
    ||||||||||||||||| ||||||||||  |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| |||||||||||||    
T  42514132 caccaacaatcacgccagaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccatctc 42514231  T
Q  486 t 486  Q
    |    
T  42514232 t 42514232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 332 - 486
Target Start/End: Original strand, 10777142 - 10777296
Alignment:
Q  332 ttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactc 431  Q
    |||||||| || ||||| || || ||||||||||||||||||| |||| | |||||||||||||| |||||||||||||||| || ||||||||| || |    
T  10777142 ttgacagctaaatcataaagccgcctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaaaatcagtatcggctccatcccccaccc 10777241  T
Q  432 tcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||  |||||||    |||||| | |||||||||||||| | ||||||||||||    
T  10777242 tcctcctaacacaacctgcaaaccagccctccccaccctcacatatcccatctct 10777296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 188 - 486
Target Start/End: Complemental strand, 30732240 - 30731942
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaa 287  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | |||||||| || |    
T  30732240 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccca 30732141  T
Q  288 cctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccaca 387  Q
    | ||||| || |    |||||| || || || | |||||  ||||   ||| ||||||| | ||||||||||| || |||||||  | ||||| ||||||    
T  30732140 catccacccccagcaggaacatattcctaactgagattgatttgtgagcagtcaagtcaaaaaggcgtctaaaccggacacacagaggaacatctccaca 30732041  T
Q  388 ccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||||||||||||||||||||||||  |  ||||| || || |||||  ||||||| | | ||||| | ||||| |||||||| ||||||||||||||    
T  30732040 ccaacaatcacgccaaaaatcagtatctgcaccatctcccaccctcctcctaacacatgtcccaaaccaaccctctccaccctcacctatcccatctct 30731942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 188 - 486
Target Start/End: Original strand, 12825413 - 12825711
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaa 287  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || || ||||| |||||||| || | ||||||| || | |||||||| || |    
T  12825413 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcatcccaagcccacaaccgcctacgccacctcaacgcctccccgccca 12825512  T
Q  288 cctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccaca 387  Q
    | ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | ||||| ||||| || |||||||| | ||||| |||||     
T  12825513 catccacccccagcaggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacacaaaggaacatctccact 12825612  T
Q  388 ccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||||||||||||||||||||||||  |  ||||| || || |||||  ||||||| | | ||||| | ||||| |||||||| ||||||||||||||    
T  12825613 ccaacaatcacgccaaaaatcagtatctgcaccatctcccaccctcctcctaacacatgtcccaaaccaaccctctccaccctcacctatcccatctct 12825711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 216 - 486
Target Start/End: Complemental strand, 28535573 - 28535303
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    ||||| ||||||||||||| |||||||| || |||||||| |  | ||||||| || | ||||||||||| || ||||| || ||   |||||| || ||    
T  28535573 ccctaaactcctctaccaactcttcctctcaagcccacaaccacctacgccacctcaacgcctccccaccgacatccacccccaacaagaacatattcct 28535474  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattg 415  Q
     || | |||||| ||||| |||| ||||||||| ||||| ||||||||  ||||||| | ||||| ||||||||||||||| ||||||||||| || |      
T  28535473 aacagagattggattgttcacagtcaagtcataaaggcgactaaaacggtcacacaaaggaacatctccacaccaacaatcccgccaaaaatctgtttct 28535374  T
Q  416 gatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
       || || || || |||||  ||||||| ||| ||||| | ||||| |||||||| ||||||||||||||    
T  28535373 acaccgtctcccaccctcctcctaacacaagacccaaaccaaccctctccaccctcacctatcccatctct 28535303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 216 - 486
Target Start/End: Original strand, 42928373 - 42928643
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    ||||||||||||||||||| ||||||||||| |||||||| || |||||||||| | | ||||||||||| || ||| |  | ||   |||||| || ||    
T  42928373 ccctacactcctctaccaactcttcctcccaagcccacaaccgccgacgccactgcaacgcctccccacccacatccgcctccaacaagaacatattcct 42928472  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattg 415  Q
     || |||||||  || || |||||||||||||||||||| ||||||||  |||||  || |||||  || ||||||||||||||| ||||||| || |      
T  42928473 aactgtgattgatttattaacagccaagtcatataggcgactaaaacggtcacacctcggaacatcaccgcaccaacaatcacgctaaaaatctgtttca 42928572  T
Q  416 gatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  || || || || |||||  ||| ||||| | ||||| | ||||| |||||||| ||||||||||||||    
T  42928573 gcaccgtcacccaccctcctcctaaaacacgccccaaaccagccctctccaccctcacctatcccatctct 42928643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 405
Target Start/End: Complemental strand, 27165875 - 27165639
Alignment:
Q  169 ccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccac 268  Q
    |||||| |||| ||| || |||||||||  |||| | ||||| |  |||||||||| ||||||||| ||||||| ||| |||||||||| |||||| |||    
T  27165875 ccacctatcagcagataaatcctgcaaataaactatgagtaataattccctacactactctaccaactcttccttccaagcccacaaacaacgacgtcac 27165776  T
Q  269 ttccatgcctccccaccaacctcca-cacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcaca 367  Q
    | |||  |||||||||||||||||| |||| |    ||||||||| || ||||||||||  ||||||||| |||||||||||||  | | ||| ||| ||    
T  27165775 taccacccctccccaccaacctccatcacc-agcaagaacatgttccttaccgtgattgctttgttgacaaccaagtcatatagcagacaaaagcgctca 27165677  T
Q  368 cacaacgaaacatttccacaccaacaatcacgccaaaa 405  Q
    |  |||| ||||||  |||||||||| |||||||||||    
T  27165676 cgaaacggaacattatcacaccaacagtcacgccaaaa 27165639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 408
Target Start/End: Complemental strand, 35983689 - 35983497
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    ||||| ||||||||||||| || |||||| | |||||||| || | ||||||| || | |||||||||||  | ||||| || ||   |||||| || ||    
T  35983689 ccctaaactcctctaccaactcctcctcctaagcccacaaccgcctacgccacctcaacgcctccccaccctcatccacccccaacaagaacatattcct 35983590  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatc 408  Q
     || | |||||| ||||| |||| ||||||||||||||| ||||||||  ||||||  | ||||| |||||||| ||||||||||||||||||    
T  35983589 aacagagattggtttgttcacagtcaagtcatataggcgactaaaacggtcacacataggaacatctccacacctacaatcacgccaaaaatc 35983497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 26072976 - 26073099
Alignment:
Q  58 tttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatctggtcc 157  Q
    ||||||||||||||||||  |||||||||| | |||||| ||||| |||| |||||  |||||||| ||||||||||| |  |||||| || |||| | |    
T  26072976 tttatgccaaattaactccaaattttgatgcaaatggggctgttcctgcgatgtcagcaagtcatacacaccacggaccgtatacccaacattctgattc 26073075  T
Q  158 ggtaaccaaagccacctgtcagaa 181  Q
    ||||||||||||||| ||||||||    
T  26073076 ggtaaccaaagccacttgtcagaa 26073099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 27767121 - 27767245
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatct 152  Q
    |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| ||||||||||||||||| || |  || |||  |||||    
T  27767121 acctgtttatgccaaattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacaagtcatatacaccacgaacagtataaccagaaatct 27767220  T
Q  153 ggtccggtaaccaaagccacctgtc 177  Q
    | ||||| ||||| | |||||||||    
T  27767221 gatccggcaaccatatccacctgtc 27767245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 33385435 - 33385356
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| |||||||||||||||||    
T  33385435 acctgtttatgccaaattaactccatattttgatgaatatgaggttgttcctgtgatgtcaacaagtcatatacaccacg 33385356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 10776843 - 10776968
Alignment:
Q  53 acctgtttatgccaaattaactcagaat-tttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatc 151  Q
    |||||||||||||||||||||||   || ||||||||| ||| |||||||| || | |||||| |||||||||||||||||||| |  || |||  ||||    
T  10776843 acctgtttatgccaaattaactccatatatttgatgaacatgaggttgttcctgtgatgtcaacaagtcatatacaccacggacagtataaccaaaaatc 10776942  T
Q  152 tggtccggtaaccaaagccacctgtc 177  Q
    || ||||| ||||| | |||||||||    
T  10776943 tgatccggcaaccacaaccacctgtc 10776968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 486
Target Start/End: Original strand, 23238785 - 23238895
Alignment:
Q  376 aacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcct 475  Q
    ||||| ||| ||||||| ||||||||||||||| ||||  |  ||||| || || |||||  ||||||| ||| ||||| | ||||| |||||||| |||    
T  23238785 aacatctccgcaccaacgatcacgccaaaaatcggtatccgtaccatctcccaccctcctcctaacacaagacccaaaccacccctctccaccctcacct 23238884  T
Q  476 atcccatctct 486  Q
    |||||||||||    
T  23238885 atcccatctct 23238895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 18359153 - 18359074
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    |||||||||||| | ||||||||   ||||||||||| ||| |||||||| || | |||||| | |||||||||||||||    
T  18359153 acctgtttatgctagattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacatgtcatatacaccacg 18359074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 27165616 - 27165578
Alignment:
Q  448 cgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  27165616 cgcaaacaacccctccccaccctcgcctatcccatctct 27165578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 30732398 - 30732356
Alignment:
Q  30 caaaaatagatactttaagaggtacctgtttatgccaaattaa 72  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||    
T  30732398 caaagatagatactttgagaggaacctgtttatgccaaattaa 30732356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 23878445 - 23878384
Alignment:
Q  221 cactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctcccc 282  Q
    |||||| |||||||||| ||||||||||||||||| |  | ||||||||| || ||||||||    
T  23878445 cactccactaccaaatcctcctcccacgcccacaacctcctacgccactttcaagcctcccc 23878384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 27117240 - 27117203
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  27117240 atagatactttgagaggaacctgtttatgccaaattaa 27117203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 8228087 - 8228127
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| ||||||||||| |||||||||||    
T  8228087 atagatactttgagaggaacctgtttatgtcaaattaactc 8228127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 27117087 - 27117007
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccac 268  Q
    |||||||||| |||||| ||||| |   |||||||||||||||||||  | |||||||| |||||||| || | |||||||    
T  27117087 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaacccctcctcccaggcccacaaccgcctacgccac 27117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 41 - 486
Target Start/End: Complemental strand, 13879560 - 13879115
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| |||||||||| ||| ||||| | ||||||   | |||||||||  || |||||||| |||| |||||||||||||||||| ||||| || || |    
T  13879560 actttgagaggtacctatttgtgccagactaactccatactttgatgaatctgaggttgttcatgcgatgtcaataagtcatataccccacgaacagaat 13879461  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttc 240  Q
    | ||||||||| |||||  |||||| | ||| || |||| |    | ||||||||||  ||||| ||||| |   ||||||||||||||||||| || ||    
T  13879460 agccaccaatcgggtccaataaccacacccatctatcagtaacggattcctgcaaagagactgttagtaataaagccctacactcctctaccaagtcctc 13879361  T
Q  241 ctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagcc 340  Q
    ||||||| |||| || || |||||||||| ||| ||  |||||||| ||||||| || ||   ||||||||| |||||||||||||  || | || |||     
T  13879360 ctcccacacccataaccggcgacgccactgccacgctcccccaccatcctccaccccgaacaagaacatgttcctcaccgtgattgatttatcgatagct 13879261  T
Q  341 aagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataa 440  Q
    |||||||| || || ||||| ||| ||||||||| |||| | |||||||||||||| ||||||||||||||||  | | ||||||| || |||||  |||    
T  13879260 aagtcataaagacgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgccaaaaatcagtatcagcttcatcccccaccctcctcctaa 13879161  T
Q  441 cacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||   | ||||| | ||||| |||||||||||||||||||||||    
T  13879160 cacaatccacaaaccaaccctctccaccctcgcctatcccatctct 13879115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 41 - 486
Target Start/End: Original strand, 25090454 - 25090899
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| |||||||||||||| ||| | | ||||||   ||| ||||||||||| |  ||||| || | |||||||||||||||||| ||||| ||  | |    
T  25090454 acttttagaggtacctgtttgtgctagactaactccatattgtgatgaagatgagagtgttcatgtgatgtcaataagtcatataccccacgaacataat 25090553  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttc 240  Q
    | ||||||||| | ||||||||||| | ||| ||||||| |  | | ||||||||||  ||||| ||||| |   ||||||||||||||||||| |  ||    
T  25090554 agccaccaatcggatccggtaaccacacccatctgtcagtatcagattcctgcaaagagactgttagtaataaagccctacactcctctaccaatttctc 25090653  T
Q  241 ctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagcc 340  Q
    ||||||| || | ||||| |||||||||| ||| ||  |||||||| ||||||| || ||   ||||||||| |||||||||||||  || |||   |      
T  25090654 ctcccacaccaataaacggcgacgccactgccacgctcccccaccatcctccacccccaacaagaacatgttcctcaccgtgattgatttattggtggtt 25090753  T
Q  341 aagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataa 440  Q
    |||||| | || || ||||| ||| ||||||||| |||| | |||||||||||||| ||||||||||||||||  | ||||||||| || |||||  |||    
T  25090754 aagtcaaaaagtcgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgccaaaaatcagtatctgctccatcccccaccctcctcctaa 25090853  T
Q  441 cacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||   || |||| | ||||  |||||||||||||||||||||||    
T  25090854 cacaatccgtaaaccaaccctttccaccctcgcctatcccatctct 25090899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 188 - 486
Target Start/End: Original strand, 43270667 - 43270964
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaa 287  Q
    ||||||||||  ||||| ||||| |  ||| |||||||  ||||||  || |||| |||  |||| |||||||||||||||| ||||||| ||||||||     
T  43270667 tcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctccttccatacccataaacgacgacgccactgccatgcc-ccccaccat 43270765  T
Q  288 cctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccaca 387  Q
    ||||||| || ||   ||||||||| |||||| | |||   || |||||||| || |||||||| |||||||||||||||||||||| |||| | |||||    
T  43270766 cctccacccccaacaagaacatgttcctcaccataattactttattgacagctaaatcatatagccgtctaaaacgcacacacaacggaacactaccaca 43270865  T
Q  388 ccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |||||| ||  |||||||||| |||| || |||||||||||| |||||  |||||||    |||||| | |||||||||||||||||||||||||||||    
T  43270866 ccaacagtctggccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatcccatctct 43270964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 188 - 486
Target Start/End: Original strand, 8300017 - 8300315
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaa 287  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || ||||||||| || | |||||||| || |    
T  8300017 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccacctcaacgcctccccgccca 8300116  T
Q  288 cctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccaca 387  Q
    | ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | ||||| ||||| || ||||| |  | ||||| ||||||    
T  8300117 catccacccccagcaggaacatattcctaactgagattgatttgtgaacagacaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctccaca 8300216  T
Q  388 ccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||||||||||||||||||||||||  |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| ||||||||||||||    
T  8300217 ccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctcgccaccctcacctatcccatctct 8300315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 35 - 486
Target Start/End: Original strand, 20824357 - 20824811
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| ||||||||| ||||| | |    
T  20824357 atagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacaagtcatatgcaccatgaa 20824456  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    | |  || |||  |||||| ||||| ||||| | |||||||||||      | ||||||||||| ||||| ||||| |  |||||||||||  ||| |||    
T  20824457 cagtataaccagaaatctgatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccctacactctactaacaa 20824556  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaac---ctccacacctaagtcgaacatgttactcaccgtgattggcttg 331  Q
     || ||||||||  |||| |||||||||||||||| ||| ||| |||| ||| |   |||||| || ||    ||||||||   ||  || ||    ||     
T  20824557 ttcctcctcccatacccataaacgacgacgccactaccacgccccccccccatctccctccacccccaacaaaaacatgttctgcattgtaataacttta 20824656  T
Q  332 ttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactc 431  Q
    |||||||| || ||||| || || ||||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||  | ||||||||| || |    
T  20824657 ttgacagctaaatcataaagccgcctaaaacgcacacacaacggaacactaccacaccaacaatcacgccaaaaatcggtatcagctccatcccccaccc 20824756  T
Q  432 tcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||  |||||||    | |||| | |||||||||||||| ||||||||||||||    
T  20824757 tcctcctaacacaacctgaaaaccagccctccccaccctcacctatcccatctct 20824811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 486
Target Start/End: Original strand, 17699561 - 17699992
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatct 152  Q
    |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| |||||||  |||||||| || |  || |||  |||||    
T  17699561 acctgtttatgccaaattaactccatattttgatgaacatgaggttgttcatgtgatgtcaacaagtcatgaacaccacgaacagtataaccagaaatct 17699660  T
Q  153 ggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgccca 252  Q
    | ||||| | ||| | ||||||||| |     |  ||||||||||  | ||| |||| ||  |||||||||||  ||| ||  || ||||||||  ||||    
T  17699661 gatccggcatccacaaccacctgtctgtttctatttcctgcaaagagattgtcagtataaa-tccctacactctactagcagttcctcctcccataccca 17699759  T
Q  253 caaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatatagg 352  Q
     |||||||||||||||| ||| ||| ||||| |||||||||| || ||    |||||||| | |||||  ||    || |||||||  || ||||| ||     
T  17699760 taaacgacgacgccactgccacgcccccccatcaacctccacccc-aacaaaaacatgttccgcaccgaaataattttattgacagttaaatcataaagc 17699858  T
Q  353 cgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaa 452  Q
    || ||||||||||||||||||| |||| | |||||||||||||| |||||||||||||||| || ||||||||| || |||||  |||||||    ||||    
T  17699859 cgcctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaaaatcagtatcggctccatcccccaccctcctcctaacacaacctgcaa 17699958  T
Q  453 actatccctccccaccctcgcctatcccatctct 486  Q
    || | |||||||||||||| ||||||||||||||    
T  17699959 accagccctccccaccctcacctatcccatctct 17699992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 486
Target Start/End: Original strand, 9922843 - 9923113
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    ||||| ||||||||||||| ||||||||||| |||||||| || | ||||||| || | ||||||||||| || ||||| || ||   ||||||||| ||    
T  9922843 ccctagactcctctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccaccgacatccacccccaacaagaacatgttcct 9922942  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattg 415  Q
     || | |||||| ||||| |||| ||||||||| ||||| ||||| |   ||||||| | ||||| ||||||||||||||| ||||||||||| || |      
T  9922943 aacagagattggtttgttcacagtcaagtcataaaggcgactaaaccattcacacaatggaacatctccacaccaacaatcccgccaaaaatctgtctct 9923042  T
Q  416 gatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  || || || || |||||  ||||||| ||| ||||| | ||||| |||||||| ||||||||||||||    
T  9923043 gcaccgtctcccaccctcctcctaacacaagacccaaaccaaccctctccaccctcacctatcccatctct 9923113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 486
Target Start/End: Original strand, 7924598 - 7924898
Alignment:
Q  186 agtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccacc 285  Q
    |||||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | |||||||| ||    
T  7924598 agtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcc 7924697  T
Q  286 aacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttcca 385  Q
     || ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | |||||  |||| || ||||| |  |  |||| ||||    
T  7924698 cacatccacccccagcaggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcataaaccggacacaaagagggacatctcca 7924797  T
Q  386 caccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctc 485  Q
    |||||||||||||||| |||||||||||  |  ||||  || ||||||||  ||||||| ||| ||||| ||||||| |||||||| | |||||||||||    
T  7924798 caccaacaatcacgcccaaaatcagtatgtgccccatgtcccactctcctcgtaacacaagacccaaaccatccctctccaccctcacgtatcccatctc 7924897  T
Q  486 t 486  Q
    |    
T  7924898 t 7924898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 37434192 - 37434290
Alignment:
Q  34 aatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    |||||| ||||| | ||| || ||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| |||||||||||||||||    
T  37434192 aatagagacttttaaaggaacatgtttatgccaaattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacaagtcatatacaccacg 37434290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 2170403 - 2170503
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| |||||||||||||| ||||||||   ||||||||||| ||| |||||||| || | |||||| | |||||||||||||||||    
T  2170403 atagaaacttttaaaggaacctgtttatgccagattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacatgtcatatacaccacgga 2170502  T
Q  135 c 135  Q
    |    
T  2170503 c 2170503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 304 - 486
Target Start/End: Complemental strand, 42177359 - 42177180
Alignment:
Q  304 gaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaa 403  Q
    ||||||||| ||||||||||||   || ||| |||| |  |||||||| || ||||| ||| |||||| ||||||| | |||||||||||||| ||||||    
T  42177359 gaacatgttcctcaccgtgattactttattggcagctagatcatatagccgcctaaatcgctcacacagcgaaacactaccacaccaacaatctcgccaa 42177260  T
Q  404 aaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |||||  | | ||  |||||||| || |||||  |||||||   |||||||   |  ||||||||||||||||||||||||||    
T  42177259 aaatcgatttcggccccatcccccaccctcctcctaacacaacccgcaaac---caatccccaccctcgcctatcccatctct 42177180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 409
Target Start/End: Original strand, 13396630 - 13396823
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    ||||||||||||||||||| || |||||||| |||||||| || | |||||||  | | ||||||||||| || ||||| || ||   |||||| || ||    
T  13396630 ccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacccacatccacccccaacaagaacatattcct 13396729  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatca 409  Q
     || |  ||||  ||||| |||  ||||||| | ||||| ||||| ||  ||||||  | ||||| ||| ||||||| ||||||||||||||||    
T  13396730 aactgaaattgatttgttaacattcaagtcaaaaaggcgcctaaaccggtcacacagtggaacatctccgcaccaacgatcacgccaaaaatca 13396823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 32266625 - 32266665
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  32266625 atagatactttgagaggaacctgtttatgccaaattaactc 32266665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 41665448 - 41665408
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  41665448 atagatactttgagaggaacctgtttatgccaaattaactc 41665408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 12134570 - 12134609
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaa 255  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  12134570 ccctacactcctctaccaagtcctcctcccacgcccacaa 12134609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 13200190 - 13200281
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    ||||| ||||| |||||||||||||||| ||||||   ||||||||||| ||| |||||||| || | |||||| |  ||||| ||||||||    
T  13200190 acttttagaggaacctgtttatgccaaactaactccatattttgatgaacatgaggttgttcctgtgatgtcaacatatcatacacaccacg 13200281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 13200310 - 13200360
Alignment:
Q  219 tacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccact 269  Q
    |||||||||||||||| || ||||||||| |||| |||||||| |||||||    
T  13200310 tacactcctctaccaactcctcctcccacacccataaacgacgtcgccact 13200360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 172164 - 172201
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  172164 atagatactttgagaggaacctgtttatgccaaattaa 172201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 2170694 - 2170775
Alignment:
Q  332 ttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtat 413  Q
    |||||||  || ||||| || || |||||||||||||| |||| |||| | |||||||||||||| ||| ||||||| ||||    
T  2170694 ttgacagttaaatcataaagccgcctaaaacgcacacataacggaacactaccacaccaacaatctcgctaaaaatcggtat 2170775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 8299864 - 8299901
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  8299864 atagatactttgagagggacctgtttatgccaaattaa 8299901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 42177668 - 42177571
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    ||||| ||||| | ||| ||||||| |||||| ||||||||  |||||||||||| ||   ||||||| || | |||||| | |||||||||||||||    
T  42177668 atagaaacttttaaaggaacctgttaatgccatattaactccaaattttgatgaacataaagttgttcatgtgatgtcaacatgtcatatacaccacg 42177571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 172715 - 172667
Alignment:
Q  438 taacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||||||| ||| ||||| ||||||| |||||||| ||||||||||||||    
T  172715 taacacaagacccaaaccatccctctccaccctcacctatcccatctct 172667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 13396449 - 13396489
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| || ||||||||||||||||||||    
T  13396449 atagatactttgagaggaacttgtttatgccaaattaactc 13396489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 41665267 - 41665215
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccac 268  Q
    ||||||||||||||||||| || |||||||| |||||||| || | |||||||    
T  41665267 ccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 41665215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 411
Target Start/End: Original strand, 2491268 - 2491649
Alignment:
Q  30 caaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatg-aagatggggttgttcttgcgctgtcaataagtcatatacac 128  Q
    |||||||||| || || | |||||||||||| ||||| || |||||   | ||||||| || ||||| |||||| ||||  ||||| |  |||||||| |    
T  2491268 caaaaatagacaccttcaaaggtacctgtttgtgccagatcaactccataatttgatgtaacatggg-ttgttcctgcgaggtcaacatatcatataccc 2491366  T
Q  129 cacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctc 228  Q
    |||| || |  ||||| ||| || | |||||||||||||| ||||||||||||||  | || |||||||||||||||||||| ||  |||||||||||||    
T  2491367 cacgaaccgtatacccgccagtcggatccggtaaccaaagtcacctgtcagaagaggaatcttgcaaagtaactgtaagtaatagtaccctacactcctc 2491466  T
Q  229 taccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggc 328  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||| ||| |||||||| |||||||||| || | |||||| |  || |||||||         
T  2491467 taccaactcttcctcccaagcccacaaacgacgacgccactgccacgcccccccaccagcctccacacccaactggaacatatacctaaccgtgacaact 2491566  T
Q  329 ttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagt 411  Q
    ||||| || | |||  || | |  |||||||| |||||||| |||| ||||| ||||||||||||||||||||| || |||||    
T  2491567 ttgttaactgtcaaaacaaaaaaccgtctaaatcgcacacaaaacggaacatctccacaccaacaatcacgccagaagtcagt 2491649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 486
Target Start/End: Original strand, 6050815 - 6051115
Alignment:
Q  186 agtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccacc 285  Q
    |||||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | |||||||| ||    
T  6050815 agtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcc 6050914  T
Q  286 aacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttcca 385  Q
     || ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | ||||| ||||| || ||||| |  | ||||| ||||    
T  6050915 cacatccacccccagcaggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctcca 6051014  T
Q  386 caccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctc 485  Q
    ||||||||||||||||||||||||||||  |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| |||||||||||||    
T  6051015 caccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccatctc 6051114  T
Q  486 t 486  Q
    |    
T  6051115 t 6051115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 216 - 486
Target Start/End: Original strand, 35541291 - 35541561
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    ||||||||||||||||||| || |||||||| |||||||| || ||||||||| || | |||||||| || || ||||| || |    |||||| || ||    
T  35541291 ccctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccacctcaacgcctccccgcccacatccacccccagcaggaacatattcct 35541390  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattg 415  Q
     || | |||||  ||||  |||| ||||||| | ||||| ||||| || ||||| |  | ||||| ||||||||||||||||||||||||||||||||      
T  35541391 aactgagattgatttgtgaacagacaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctccacaccaacaatcacgccaaaaatcagtatct 35541490  T
Q  416 gatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| ||||||||||||||    
T  35541491 gccccatctcccactctcctcctaacacaagacccaaaccatccctcgccaccctcacctatcccatctct 35541561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 34 - 486
Target Start/End: Complemental strand, 47623157 - 47622705
Alignment:
Q  34 aatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgg 133  Q
    |||||||||||| |||||||||||||||||||||||||| ||   || |  ||| |  || |||||||| || | |||||  | |||||| || ||| ||    
T  47623157 aatagatactttgagaggtacctgtttatgccaaattaattccatatatgaatgtaactgaggttgttcctgtgatgtcagcatgtcatacaccccatgg 47623058  T
Q  134 actgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctacca 233  Q
    ||||| ||||| ||   ||| |||| |||||| | |||||| || ||  || | |||||||||  | |||| ||||| |   || |||||||||||||||    
T  47623057 actgaatacccgcctccctgatccgataaccacaaccacctatctgacaaagattcctgcaaaaaagctgtcagtaataaagccttacactcctctacca 47622958  T
Q  234 aatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgtt 333  Q
      || |||||||||||||| || ||||||||||||| |||  |||| |||||||||||||| || ||    |||||  |  | | |||||||   |||||    
T  47622957 ggtcctcctcccacgcccataaccgacgacgccactaccacacctcaccaccaacctccacccccaacaaaaacatagtcataatcgtgattactttgtt 47622858  T
Q  334 gacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctc 433  Q
    ||| ||||| | |||||| |||||||| ||| |||  |||| |||||  |||||||||||||| |||||||||||||||| ||| |||||||| || |||    
T  47622857 gacggccaaattatatagccgtctaaagcgctcacgaaacggaacatcaccacaccaacaatcccgccaaaaatcagtatcggaaccatcccccaccctc 47622758  T
Q  434 ctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||  |||||||   || |||| | ||||||||| |||||  ||||||||||||    
T  47622757 ctcctaacacaatccgaaaaccaaccctccccatcctcgtttatcccatctct 47622705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 188 - 486
Target Start/End: Complemental strand, 11909031 - 11908733
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaa 287  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | |||||||| || |    
T  11909031 tcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgccca 11908932  T
Q  288 cctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccaca 387  Q
    | ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | ||||| ||||| || |||||||| | ||||| ||||||    
T  11908931 catccacccccatcatgaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacacaaaggaacatctccaca 11908832  T
Q  388 ccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |||||||||||| |||||||||||||  |  ||||| || || |||||  ||||||| | | ||||| | ||||| |||||||| ||||||||||||||    
T  11908831 ccaacaatcacgtcaaaaatcagtatctgcaccatctcccaccctcctcctaacacatgtcccaaaccaaccctctccaccctcacctatcccatctct 11908733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 35 - 486
Target Start/End: Original strand, 43388428 - 43388877
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| |||||||||||||||||||||||   ||||||||||| |||  ||||||| || | |||||| ||||||||||||||||| |    
T  43388428 atagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaagttgttcctgtgatgtcaacaagtcatatacaccacgaa 43388527  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    | |  || |||  |||||| ||||| ||||| | ||||||||| |        ||||||||||| ||||| ||||| |  |||||||||||  ||| |||    
T  43388528 cagtataaccagaaatctgatccggcaaccacatccacctgtctgtttctgtttcctgcaaagtgactgtcagtaataaatccctacactctactagcaa 43388627  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttg 334  Q
     || ||||||||  |||| ||||||||||| |||| ||| ||| ||||| || ||||||| || ||    |||||||| ||||| |  ||    ||  ||    
T  43388628 ttcctcctcccatacccataaacgacgacgtcactaccacgcccccccatcaccctccacccccaacaaaaacatgttcctcactgaaataactttagtg 43388727  T
Q  335 acagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcc 434  Q
    ||||| || ||||| || || ||||||||  ||||||||| |||| | |||||||||||||| ||||||||||||| ||  | ||||||||| || ||||    
T  43388728 acagctaaatcataaagccgcctaaaacg--cacacaacggaacactaccacaccaacaatctcgccaaaaatcagcatcagctccatcccccaccctcc 43388825  T
Q  435 taataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  |||||||    | |||| | ||||||||||| || ||||||||||||||    
T  43388826 tcctaacacaacttgtaaaccagccctccccaccatcacctatcccatctct 43388877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 282
Target Start/End: Complemental strand, 16917888 - 16917641
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| |||||||||||||||||||||||   ||||||||||| | | |||||||| || | |||||| ||||||||| ||||||| |    
T  16917888 atagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacaagaggttgttcctgtgatgtcaacaagtcatatgcaccacgaa 16917789  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    | |  || |||  |||||| ||||| ||||| | |||||||||||      | ||||||||||| ||||| ||||| |  |||||||||||  ||| |||    
T  16917788 cagtataaccagaaatctgatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccctacactctactaacaa 16917689  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctcccc 282  Q
     || | ||||||  |||| |||||||||||||||| ||| ||| ||||    
T  16917688 ttccttctcccatacccataaacgacgacgccactgccacgccccccc 16917641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 31779477 - 31779558
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccact 269  Q
    |||||||| |||||||| ||||| || |||||||||||||||||||| ||||| ||| |  || ||||||| ||||||||||    
T  31779477 tcctgcaatgtaactgtgagtaatagttccctacactcctctaccaactcttcatcctaaaccaacaaacggcgacgccact 31779558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 28358133 - 28358208
Alignment:
Q  217 cctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctcc 292  Q
    |||||||||||||||||  ||||| |||||||||||||| |  | ||||||| ||||||||| ||||||| |||||    
T  28358133 cctacactcctctaccatctcttcttcccacgcccacaatcttctacgccacctccatgccttcccaccatcctcc 28358208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 37191267 - 37191193
Alignment:
Q  57 gtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccac 131  Q
    |||||||||| ||||||||   ||||||||||| ||| |||||||| || | |||||| | ||||||||||||||    
T  37191267 gtttatgccagattaactccatattttgatgaacatgaggttgttcatgtgatgtcaacatgtcatatacaccac 37191193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 11909184 - 11909147
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  11909184 atagatactttgagaggaacctgtttatgccaaattaa 11909147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 35541110 - 35541147
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  35541110 atagatactttgagagggacctgtttatgccaaattaa 35541147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 51052541 - 51052578
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  51052541 atagatactttgagaggaacctgtttatgccaaattaa 51052578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 34 - 486
Target Start/End: Complemental strand, 14373071 - 14372619
Alignment:
Q  34 aatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgg 133  Q
    |||||||||||| |||||||||||||||||||||||||| ||   |     ||| |  || || ||||| || | |||||  | |||||| || ||||||    
T  14373071 aatagatacttttagaggtacctgtttatgccaaattaaatccatagaagaatgtaactgaggctgttcctgggatgtcagcatgtcatacaccccacgg 14372972  T
Q  134 actgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctacca 233  Q
    |||||||| |||||   ||| ||||||||||| | ||| || || |||  | | |||||||||| |||||| ||||| |   |||||||||||||||| |    
T  14372971 actgagtaaccacctccctgatccggtaaccacaaccatctatcggaaacagattcctgcaaagaaactgtcagtaataaagccctacactcctctacta 14372872  T
Q  234 aatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgtt 333  Q
      || || ||||||||||| || ||| ||||||||||||| ||||| |||||||||||||| || ||    ||||| || || |||||||||   |||||    
T  14372871 ggtcctcgtcccacgcccataaccgatgacgccacttccacgcctcaccaccaacctccacccccaataaaaacatatttctaaccgtgattactttgtt 14372772  T
Q  334 gacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctc 433  Q
    ||| ||||| |||||||  ||||||||  || |||  |||| |||||| |||||||||||||| |||||||||||||||| ||| |||||||| || |||    
T  14372771 gacggccaaatcatataaccgtctaaagtgctcacgaaacggaacattaccacaccaacaatcccgccaaaaatcagtatcggaaccatcccccaccctc 14372672  T
Q  434 ctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||  | |||||   || |||| | ||||||||||||||  ||||||| |||||    
T  14372671 ctcctgacacaacccgaaaaccaaccctccccaccctcatctatcccgtctct 14372619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 444
Target Start/End: Complemental strand, 15958893 - 15958483
Alignment:
Q  34 aatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgg 133  Q
    |||||| ||||||||||| |||||||||||||| |||||||    |||| |||| |  ||  ||||||| || | |||||  | |||| | ||||| ||     
T  15958893 aatagagactttaagaggaacctgtttatgccatattaacttcatatttggatgtaactgaagttgttcctgtgatgtcagcatgtcagacacaccgcga 15958794  T
Q  134 actgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctacca 233  Q
    ||||| |||||||||   || ||||||||||| | ||| || ||||   |  | |||||||||| |||||| ||||| |   ||||||| ||||||| ||    
T  15958793 actgaatacccaccaccttgatccggtaaccacaaccatctatcaggcaatgattcctgcaaagaaactgtcagtaataaaaccctacattcctctaaca 15958694  T
Q  234 aatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgtt 333  Q
    | | ||||| ||||||||| |||||||||||| ||| ||| |||||||||||||| |||||  | |    |||||| |  || || ||||||   |||||    
T  15958693 agttttcctaccacgcccataaacgacgacgcaactgccacgcctccccaccaacatccacctccagcaagaacatatgcctaactgtgattactttgtt 15958594  T
Q  334 gacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctc 433  Q
    ||||||||| |||||||| || |||||  || |||| |||| |||||| ||||||||||||||||||||||||||||| | |||||||||||| || |||    
T  15958593 gacagccaaatcatatagccgactaaagagctcacaaaacggaacattaccacaccaacaatcacgccaaaaatcagtttcggatccatcccccaccctc 15958494  T
Q  434 ctaataacaca 444  Q
    ||  |||||||    
T  15958493 ctcctaacaca 15958483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 13937756 - 13937995
Alignment:
Q  30 caaaaatagatactttaagaggtacctgtttatgccaaattaactcagaattttgatg-aagatggggttgttcttgcgctgtcaataagtcatatacac 128  Q
    |||||||||| ||||| | ||| |||||||| |||||||| |||||   ||||||||| || ||||| |||||| ||||  ||||| |  ||||| ||||    
T  13937756 caaaaatagacactttcaaaggcacctgtttgtgccaaatcaactccatattttgatgtaacatggg-ttgttcctgcgaagtcaacatatcatacacac 13937854  T
Q  129 cacggactgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctc 228  Q
    ||   || |  ||||||||| |||| || ||||||||||||||||||||| ||||  | ||||||||||||||||||||||| |  ||||||||||||||    
T  13937855 cattaaccgtatacccaccagtctgatctggtaaccaaagccacctgtcaaaagaggaatcctgcaaagtaactgtaagtaataattccctacactcctc 13937954  T
Q  229 taccaaatcttcctcccacgcccacaaacgacgacgccact 269  Q
    |||||| |||||||||||  ||||||| || ||||||||||    
T  13937955 taccaactcttcctcccaaacccacaagcggcgacgccact 13937995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 35 - 486
Target Start/End: Complemental strand, 20883112 - 20882661
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| |||| ||||||||| ||||||||   ||||||||||| ||| |||||||| || | |||||| | ||||||||||||||| |    
T  20883112 atagaaacttttaaaggaacctatttatgccagattaactccatattttgatgaacatgtggttgttcctgtgatgtcaacatgtcatatacaccacgaa 20883013  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    |    || || | |||||| ||||||||||| | ||||||||| |      | ||||||||||  ||||| ||||| |  ||||||||| | |||||||     
T  20883012 caatatagcctctaatctgatccggtaaccacaaccacctgtctgtttctgattcctgcaaagagactgttagtaataaatccctacacccttctaccag 20882913  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacct-aagtcgaacatgttactcaccgtgattggcttgtt 333  Q
     || |||||||||||||| |||||||||||||| | |||  || |||||||| |||||||  || ||   ||||||||| |||||  |||||   || ||    
T  20882912 gtcctcctcccacgcccataaacgacgacgccaatgccacacc-ccccaccatcctccacctctcaacaagaacatgttcctcacaatgattactttatt 20882814  T
Q  334 gacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctc 433  Q
     ||| | || |||||||| || ||||| ||| |||||| || |||| | |||||||||||||| ||||||||||  || | || ||||||||| || |||    
T  20882813 aacaactaaatcatatagccgcctaaagcgctcacacagcggaacactaccacaccaacaatctcgccaaaaattggtttcggctccatcccccaccctc 20882714  T
Q  434 ctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    ||  |||||||  | |||||| | |||||||||||||||||||||||||||||    
T  20882713 ctcctaacacaacatgcaaaccaaccctccccaccctcgcctatcccatctct 20882661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 53 - 486
Target Start/End: Complemental strand, 17573716 - 17573284
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatct 152  Q
    |||||||||||||||||||||||   |||||||| || ||| |||||||| || | |||||| ||||||||| ||| ||| || |  || |||  |||||    
T  17573716 acctgtttatgccaaattaactccatattttgataaacatgaggttgttcctgtgatgtcaacaagtcatatgcacaacgaacagtataaccagaaatct 17573617  T
Q  153 ggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgccca 252  Q
    | ||||| ||||| | |||||||||||      | ||||||||||| ||||| ||||| |  |||||||||||  ||| ||| || ||||||||  ||||    
T  17573616 gatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccctacactctactaacaattcctcctcccataccca 17573517  T
Q  253 caaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatatagg 352  Q
     |||||||||||||||| |||  || ||||| |  ||||||| || ||    |||||||| | ||  || ||    || |||||||| || ||||| ||     
T  17573516 taaacgacgacgccactgccacacc-ccccatctccctccacccccaacaaaaacatgttccgcattgtaataactttattgacagctaaatcataaagc 17573418  T
Q  353 cgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaa 452  Q
    || ||||||||||||||||||| |||| | |||||||||||||| ||||||||||| ||||  | ||||||||| || |||||  |||||||    | ||    
T  17573417 cgcctaaaacgcacacacaacggaacactaccacaccaacaatcgcgccaaaaatcggtatcagctccatcccccaccctcctcctaacacaacctgaaa 17573318  T
Q  453 actatccctccccaccctcgcctatcccatctct 486  Q
    || | |||||||||||||| ||||||||||||||    
T  17573317 accagccctccccaccctcacctatcccatctct 17573284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 408
Target Start/End: Complemental strand, 24767327 - 24767135
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    ||||||||||||||||||| ||||||||||| |||||||| || |||||||||  | | ||||||||||| || ||||| || ||   |||||| || ||    
T  24767327 ccctacactcctctaccaactcttcctcccaagcccacaaccgtcgacgccaccgcaacgcctccccacccacgtccacgcccaacaagaacatattcct 24767228  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatc 408  Q
     || |||||||  ||||| |||||||||||||||||||| ||||||||  ||||||  | |||||  || ||||||| |||||||||||||||    
T  24767227 aactgtgattgatttgttaacagccaagtcatataggcgactaaaacggtcacacagtggaacatcaccgcaccaacgatcacgccaaaaatc 24767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 35 - 486
Target Start/End: Complemental strand, 17606413 - 17605962
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| |||||||||||||||||||||||   ||||||||||| ||| | |||||| || | |||||| ||||||||||||||||| |    
T  17606413 atagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgagattgttcctgtgatgtcaacaagtcatatacaccacgaa 17606314  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    | |  || |||  |||||| ||||| ||||| | |||||||||||      | ||||||||||| | ||| | ||| |  |||||||||||  |||  ||    
T  17606313 cagtataaccataaatctgatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgaatgtcaataataaatccctacactctactaaaaa 17606214  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttg 334  Q
     || ||||||||  |||| |||||||  || |||| ||| ||| ||||| || ||||||| || ||    |||||||| | ||| |  ||    || |||    
T  17606213 ttcctcctcccatacccataaacgacaccgtcactgccacgcccccccatcaccctccacccccaacaaaaacatgttccgcactgaaataactttattg 17606114  T
Q  335 acagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcc 434  Q
    ||||| || ||||| || || ||||||||||||||||||| |||| | |||||||||||||| ||||||||||| ||||  | ||||||||| || ||||    
T  17606113 acagctaaatcataaagccgcctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaaaatcggtatcagctccatcccccaccctcc 17606014  T
Q  435 taataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  |||||||    | |||| | |||||||||||||| ||||||||||||||    
T  17606013 tcctaacacaacctgtaaaccagccctccccaccctcacctatcccatctct 17605962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 35 - 486
Target Start/End: Complemental strand, 21630186 - 21629735
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| | ||| ||||| |||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| ||||||||||||||||| |    
T  21630186 atagaaacttttaaaggaacctggttatgccaaattaactccatattttgatgaacatgaggttgttcctgtgatgtcaacaagtcatatacaccacgaa 21630087  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    | |  || |||  |||||| ||||| ||||| | ||||||||| |        ||||||||||||||||| ||||| |  |||||||||||  ||| |||    
T  21630086 cagtataaccagaaatctgatccggcaaccatatccacctgtctgtttctgtttcctgcaaagtaactgtcagtaataaatccctacactctactaacaa 21629987  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttg 334  Q
     || ||||||||  |||| |||||||  || |||| ||| ||| ||||| || ||||||| || ||    |||||||| | ||| |  ||    || |||    
T  21629986 ttcctcctcccatacccataaacgacaccgtcactgccacgcccccccatcaccctccacccccaacaaaaacatgttccgcactgaaataactttattg 21629887  T
Q  335 acagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcc 434  Q
    ||||| || ||||| || || ||||||||||||||||||| |||| | |||||||||||||| |||||||||||  |||  | ||||||||| || ||||    
T  21629886 acagctaaatcataaagccgcctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaaaatcgatatcagctccatcccccaccctcc 21629787  T
Q  435 taataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  |||||||    | |||| | |||||||||||||| | ||||||||||||    
T  21629786 tcctaacacaacctgaaaaccagccctccccaccctcacttatcccatctct 21629735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 217 - 411
Target Start/End: Original strand, 33185678 - 33185872
Alignment:
Q  217 cctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactc 316  Q
    |||||||||||||||||| ||||||||||| | ||||||||| ||||| |||| ||| |||||||||||| |||||  ||| ||   || |||||| ||     
T  33185678 cctacactcctctaccaactcttcctcccatgtccacaaacggcgacgtcactgccacgcctccccaccatcctcccaacccaacaggagcatgttccta 33185777  T
Q  317 accgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagt 411  Q
    |||||||||   |||||||||| ||||||||| || || | | | ||| |||  || | |||||  |||||||||||||||||||||||||||||    
T  33185778 accgtgattactttgttgacagtcaagtcataaagacgacgagagcgctcacggaaaggaacatcaccacaccaacaatcacgccaaaaatcagt 33185872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 486
Target Start/End: Complemental strand, 10577310 - 10576878
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatct 152  Q
    |||||||||||||||||||||||   ||||||||||| ||| |||||||| || | |||||| ||||||||||||||||  || |  || |||  ||| |    
T  10577310 acctgtttatgccaaattaactctatattttgatgaacatgaggttgttcctgtgatgtcaaaaagtcatatacaccacaaacagtataaccagaaatat 10577211  T
Q  153 ggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgccca 252  Q
    | ||||| ||||| | ||||||||| |        ||||||||||  ||||| ||||| |  |||||||||||  ||| ||| || ||||||||  ||||    
T  10577210 gatccggcaaccacaaccacctgtctgtttctgtttcctgcaaagagactgtcagtaataaatccctacactctactagcaattcctcctcccataccca 10577111  T
Q  253 caaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatatagg 352  Q
     |||||||||||||||| ||| ||| ||||| || ||||||| || |     |||||||| | ||| || ||    || |||||||  || ||||| ||     
T  10577110 taaacgacgacgccactgccacgcc-ccccatcaccctccacccccagcaaaaacatgttccgcactgtaataactttattgacagttaaatcataaagc 10577012  T
Q  353 cgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaa 452  Q
    || |||||||| |||||||||| |||| | |||||||||||||| | ||||||||| ||||  | ||||||||| || |||||  |||||||      ||    
T  10577011 cgcctaaaacgaacacacaacggaacactaccacaccaacaatctcaccaaaaatcggtatcagctccatcccccaccctcctcctaacacaacctataa 10576912  T
Q  453 actatccctccccaccctcgcctatcccatctct 486  Q
    || | |||||||||||||| ||||||||||||||    
T  10576911 accagccctccccaccctcacctatcccatctct 10576878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 18682486 - 18682402
Alignment:
Q  162 accaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctccca 246  Q
    ||||||||||||||||||||| | |  ||| |||||||||||| ||||| ||  |||||||||||||| |||| |||||||||||    
T  18682486 accaaagccacctgtcagaagtagaaacctacaaagtaactgtgagtaatagagccctacactcctctgccaactcttcctccca 18682402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 5041760 - 5041817
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttcca 273  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| |||||||||| ||||    
T  5041760 ccctacactcctctaacaactcttcctcccacacccacaaaccacgacgccacctcca 5041817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 13938099 - 13938156
Alignment:
Q  354 gtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagt 411  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||| ||||| |||||    
T  13938099 gtctaaatcgcacacaaaacggaacatttccacaccaacaatcacgacaaaagtcagt 13938156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 2553698 - 2553738
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  2553698 atagatactttgagaggaacctgtttatgccaaattaactc 2553738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 21168413 - 21168493
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccac 268  Q
    |||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | |||||||    
T  21168413 tcctgcaaagaaactgttagtaataaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccac 21168493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 23065942 - 23065894
Alignment:
Q  219 tacactcctctaccaaatcttcctcccacgcccacaaacgacgacgcca 267  Q
    |||||||||||| |||||| ||||||||||||||||| ||||| |||||    
T  23065942 tacactcctctagcaaatcctcctcccacgcccacaaccgacgccgcca 23065894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 12734186 - 12734223
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  12734186 atagatactttgagaggaacctgtttatgccaaattaa 12734223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 18651313 - 18651273
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||| ||||| ||||| |||||||||||||||||||||||    
T  18651313 atagagactttgagaggaacctgtttatgccaaattaactc 18651273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 21168260 - 21168300
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  21168260 atagatactttgagaggaacctatttatgccaaattaactc 21168300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 41 - 413
Target Start/End: Original strand, 40176735 - 40177107
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagt 140  Q
    ||||| |||||||||||||| ||||| | ||||||   ||||||||||| ||| |||||||| || | |||||||||||||||||| ||| | || || |    
T  40176735 acttttagaggtacctgtttgtgccagactaactccatattttgatgaatatgaggttgttcctgtgatgtcaataagtcatataccccatgaacagaat 40176834  T
Q  141 acccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttc 240  Q
    | |||| |||| | ||||||||||  | ||| ||||||| |  | | ||||||||||  ||||| ||||| |   ||||||||||||||||||| || ||    
T  40176835 agccacaaatcggatccggtaaccgcacccatctgtcagtatcagattcctgcaaagagactgttagtaataaagccctacactcctctaccaagtcctc 40176934  T
Q  241 ctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagcc 340  Q
    ||||||| |||| || || |||||||||| ||| ||  |||||||| ||||||| || ||   |||||| || |||||||||||||  || ||||  ||     
T  40176935 ctcccacacccataaccggcgacgccactgccacgctcccccaccatcctccacccccaacaagaacatcttcctcaccgtgattgatttattgatggct 40177034  T
Q  341 aagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtat 413  Q
    |||||||| || || ||||| ||  ||||||||| |||| | |||||||||||||| | ||||||||| ||||    
T  40177035 aagtcataaagtcgcctaaagcgttcacacaacggaacactaccacaccaacaatctcaccaaaaatcggtat 40177107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 215 - 486
Target Start/End: Original strand, 12645777 - 12646048
Alignment:
Q  215 tccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttac 314  Q
    ||||||||||||||||||||||| |||| |||| |||| |||||||| ||||||| ||| ||  | |||||  ||||||| || ||   ||||||||| |    
T  12645777 tccctacactcctctaccaaatcctccttccacacccataaacgacgtcgccactgccacgctcctccaccctcctccacccccaacaagaacatgttcc 12645876  T
Q  315 tcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtatt 414  Q
    | || ||||||   || |||||||| ||||||||||| || ||||| ||| ||||||| | |||| | |||||||||||||| ||||||||||| ||  |    
T  12645877 ttactgtgattactttattgacagctaagtcatatagtcgcctaaagcgctcacacaaaggaacactaccacaccaacaatctcgccaaaaatctgttgt 12645976  T
Q  415 ggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    || |||||| || || |||||  |||||||   ||||||| |  ||||||||||||||||||||||||||||    
T  12645977 ggctccatctcccaccctcctcctaacacaatccgcaaaccaatcctccccaccctcgcctatcccatctct 12646048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 486
Target Start/End: Original strand, 28252962 - 28253232
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    |||||||||||||||| |  || |||||||| ||||| || ||||||||||||| ||| ||||| |||||||||||||| || ||    |||||  | ||    
T  28252962 ccctacactcctctactaggtcatcctcccatgcccataaccgacgacgccactaccacgcctcaccaccaacctccacccccaacaaaaacatagtcct 28253061  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattg 415  Q
     |||||||||   |||||||| ||||| |||||||| |||||||| ||| |||  |||  |||||  ||||||| |||||| |||||||||||||||| |    
T  28253062 aaccgtgattactttgttgacggccaaatcatatagccgtctaaagcgctcacgaaacagaacatcaccacaccgacaatcccgccaaaaatcagtatcg 28253161  T
Q  416 gatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    || |||||||| || |||||  |||||||   || |||| | ||||||||||||||| |||||||||||||    
T  28253162 gaaccatcccccaccctcctcctaacacaaaccgaaaaccaaccctccccaccctcgtctatcccatctct 28253232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 188 - 486
Target Start/End: Original strand, 14439960 - 14440256
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaa 287  Q
    ||||||||||  ||||| ||||| |  ||| |||||||  ||| ||| || ||||||||  |||| |||||||||||||||| ||    | ||||||||     
T  14439960 tcctgcaaagagactgttagtaataaatccatacactctactaacaattcctcctcccatacccataaacgacgacgccactgcccccnccccccaccat 14440059  T
Q  288 cctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccaca 387  Q
    ||||||| || ||    |||||||| | |||||| |||   || |||||||| || |||||||| || ||||||||||||||||||| |||| | |||||    
T  14440060 cctccacccccaacaaaaacatgttccgcaccgtaattactttattgacagctaaatcatatagccgcctaaaacgcacacacaacggaacactaccaca 14440159  T
Q  388 ccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgac--gcaaactatccctccccaccctcgcctatcccatctc 485  Q
    ||||||||| ||||||| ||| |||| || ||||||||  || |||||     ||||| ||  |||||| | ||||||||||||||||||||||||||||    
T  14440160 ccaacaatctcgccaaatatcggtatcggctccatccctcaccctcct----ccacacaacctgcaaaccagccctccccaccctcgcctatcccatctc 14440255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 35 - 294
Target Start/End: Original strand, 41207077 - 41207336
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||| ||||| ||||| |||||||||||||||||||||||   |||| |||| |  || || ||||| |||| |||||  | |||||| || ||||  |    
T  41207077 atagagactttgagaggaacctgtttatgccaaattaactccatatttggatgtaactgaggatgttcctgcgatgtcagcatgtcataaactccacata 41207176  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    |||| |||||||||  ||| || |||||||| | ||| || || |      | |||||||| | |||||||| ||| |   |||||||||||||||||||    
T  41207177 ctgaatacccaccatcctgatctggtaaccacaaccatctatctgccactgattcctgcaaggaaactgtaaataataaaaccctacactcctctaccaa 41207276  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccac 294  Q
     ||||||||||| |||||||| ||||||||||| | | | ||||||||||| || |||||    
T  41207277 ctcttcctcccatgcccacaaccgacgacgccattgcaacgcctccccacccacatccac 41207336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 405
Target Start/End: Complemental strand, 17764836 - 17764668
Alignment:
Q  236 tcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttga 335  Q
    ||||||||||||| ||| || ||||||||||||| ||| | ||||||||| || ||||| || ||   |||||| || || || ||| ||   |||||||    
T  17764836 tcttcctcccacgtccataagcgacgacgccactgccacgtctccccaccgacatccaccccaaacaagaacatattcctaactgtgcttat-ttgttga 17764738  T
Q  336 cagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaa 405  Q
    | ||||| |||||||| |||||||| ||| |||| || | |||||| ||||||||||||||||| |||||    
T  17764737 cggccaaatcatatagtcgtctaaagcgctcacaaaatggaacattaccacaccaacaatcacgtcaaaa 17764668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 38604305 - 38604199
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaa 287  Q
    |||||||||| |||||||||||  |  | |||||||||||||||||| |||||||||||| |||| |||| |||  |||||| ||| ||  ||||||||     
T  38604305 tcctgcaaagaaactgtaagtactaaattcctacactcctctaccaagtcttcctcccacacccataaactacggtgccactgccacgcacccccaccat 38604206  T
Q  288 cctccac 294  Q
    |||||||    
T  38604205 cctccac 38604199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 28252780 - 28252818
Alignment:
Q  34 aatagatactttaagaggtacctgtttatgccaaattaa 72  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  28252780 aatagatacttttagaggtacctgtttatgccaaattaa 28252818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 18154616 - 18154659
Alignment:
Q  140 tacccaccaatctggtccggtaaccaaagccacctgtcagaaga 183  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||    
T  18154616 tacccaccagtctgatccggtaaccaaagccacctgtcaaaaga 18154659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 16315672 - 16315610
Alignment:
Q  217 cctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctc 279  Q
    ||||||||||||||||||  | ||||||||||||||||| | || |||||| ||||| |||||    
T  16315672 cctacactcctctaccaaggcctcctcccacgcccacaacctactacgccagttccaagcctc 16315610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 4552230 - 4552267
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  4552230 atagatactttaagaggaacctatttatgccaaattaa 4552267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 14439813 - 14439910
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    ||||| ||||| | ||| |||||||||||||| ||||||||   | ||||||||| ||| ||| |||| || | |||||| | |||||||||||||||    
T  14439813 atagaaacttttaaaggaacctgtttatgccagattaactccatagtttgatgaacatgaggtcgttcctgtgatgtcaacatgtcatatacaccacg 14439910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 38604447 - 38604359
Alignment:
Q  41 actttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacacc 129  Q
    ||||| |||||||| ||||||||||| ||||||||   ||||||||||| ||  |||||||| || | |||||| | |||||| |||||    
T  38604447 acttttagaggtacttgtttatgccagattaactccatattttgatgaaaattaggttgttcctgtgatgtcaacatgtcatacacacc 38604359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 486
Target Start/End: Original strand, 37254837 - 37255270
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatct 152  Q
    |||||||||||||| ||||||||   ||||||||||| ||| ||||||||  | | |||||| | ||| ||||||||||| || |  || || | |||||    
T  37254837 acctgtttatgccagattaactccatattttgatgaacatgaggttgttcccgtgatgtcaacatgtcgtatacaccacgaacaggatagcctctaatct 37254936  T
Q  153 ggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgccca 252  Q
    | ||||||||||| | ||||||||| |     || ||||||||||    ||| ||||| |  ||||||||||| |||||||| || ||||||||| ||||    
T  37254937 gatccggtaaccacaaccacctgtctgtttctaattcctgcaaagagtttgttagtaataaatccctacactcttctaccaagtcctcctcccacaccca 37255036  T
Q  253 caaacgacgacgccacttccatgcctccccaccaacctccacacct-aagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatatag 351  Q
     || ||||| ||||||| ||| ||| |||||||| ||||||| ||  ||   ||||||||| ||||||||||||   || |||||||| || ||||||||    
T  37255037 taaccgacggcgccactgccacgcc-ccccaccatcctccaccccccaacaagaacatgttcctcaccgtgattactttattgacagctaaatcatatag 37255135  T
Q  352 gcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgca 451  Q
     || ||||| ||| |||||| || |||| | || ||||||||||| ||||||||||| || | || ||||||||| || |||||  |||||||   ||||    
T  37255136 ccgcctaaagcgctcacacagcggaacactaccgcaccaacaatctcgccaaaaatcggtttcggctccatcccccaccctcctcctaacacaacccgca 37255235  T
Q  452 aactatccctccccaccctcgcctatcccatctct 486  Q
    ||| | | |||| |||||||||||||| |||||||    
T  37255236 aaccaactctcctcaccctcgcctatctcatctct 37255270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 486
Target Start/End: Complemental strand, 4938056 - 4937756
Alignment:
Q  186 agtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccacc 285  Q
    |||||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | |||||||| ||    
T  4938056 agtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcc 4937957  T
Q  286 aacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttcca 385  Q
     || ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | ||||| ||||| || ||||| |  | ||||| ||||    
T  4937956 cacatccacccccagcaggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctcca 4937857  T
Q  386 caccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctc 485  Q
    ||||||||||||||||||||||||||||  |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| |||||||||||||    
T  4937856 caccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccatctc 4937757  T
Q  486 t 486  Q
    |    
T  4937756 t 4937756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 219 - 486
Target Start/End: Original strand, 31422849 - 31423114
Alignment:
Q  219 tacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcac 318  Q
    |||||||||||||||| || ||||||||| |||| ||||||||| |||||| ||| |||  | ||||| ||||||| || ||   || |||||| |||||    
T  31422849 tacactcctctaccaagtcatcctcccacacccataaacgacgatgccactgccacgcc--cacaccatcctccacccccaacaagagcatgttcctcac 31422946  T
Q  319 cgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggat 418  Q
     ||||||   || |||||||| ||||||||||| || ||||| ||| ||||||||| |||  | |||||||||||||| ||||||||||| || |    |    
T  31422947 tgtgattactttattgacagctaagtcatatagccgcctaaatcgctcacacaacggaactctaccacaccaacaatctcgccaaaaatccgtttcaatt 31423046  T
Q  419 ccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |||||| | || |||||  |||||||   ||||||| |||||||||||||||||||||||||||||||    
T  31423047 ccatcctccaccctcctcctaacacaacccgcaaaccatccctccccaccctcgcctatcccatctct 31423114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 222 - 486
Target Start/End: Original strand, 17720883 - 17721147
Alignment:
Q  222 actcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgt 321  Q
    ||||||||||||| ||||||||||| |||||||| || | ||||||| || | ||||||||||| || ||||| || ||   || |||||| || || |     
T  17720883 actcctctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccaccgacatccacccccaacaagatcatgttcctaacaga 17720982  T
Q  322 gattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatcca 421  Q
    |||| | ||||| |||| ||||||||| ||||| ||||| ||  ||||||| ||||||| ||||||||||||||| | ||||||||| || |  |  ||     
T  17720983 gattagtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatgaaacatctccacaccaacaatcccaccaaaaatctgtctctgcaccg 17721082  T
Q  422 tcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    || || || |||||  ||||||| ||| ||||| | ||||| |||||||| ||||||||||||||    
T  17721083 tctcccaccctcctcctaacacaagacccaaaccaaccctctccaccctcacctatcccatctct 17721147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 486
Target Start/End: Original strand, 47877044 - 47877495
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacgga 134  Q
    ||||||||||| ||||| |||||||||||||||||||||||   ||||||||| |  ||||| || || || | |||||  | |||||| || ||||| |    
T  47877044 atagatactttgagaggaacctgtttatgccaaattaactccctattttgatgtaactggggctgctcctgtgatgtcagcatgtcataaactccacgta 47877143  T
Q  135 ctgagtacccaccaatctggtccggtaaccaaagccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaa 234  Q
    |  | |||||||||  ||| |  ||||||||||| || ||||| |      | |||||||| | |||||| ||||| |   ||| |||||||||||||||    
T  47877144 cataatacccaccatcctgattaggtaaccaaagtcatctgtctgtcactgattcctgcaaggaaactgttagtaataaaaccccacactcctctaccaa 47877243  T
Q  235 atcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcaccgtgattggcttgttg 334  Q
     ||||||||||| |||||||| || | |||||||  | | ||||||||||| || ||||| || ||   |||||| || || || | |||||  |||||     
T  47877244 ctcttcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacccacgtccacccccaacaagaacatattcctaactgagattgatttgtta 47877343  T
Q  335 acagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcc 434  Q
    |||| ||||||||| ||||| ||||||||  | ||||  | ||||| ||| ||||||| ||||||||||||||| || |  |  || || || || |||     
T  47877344 acagtcaagtcataaaggcgactaaaacggtcgcacagtggaacatctccgcaccaacgatcacgccaaaaatctgtttatgcaccgtctcccaccctca 47877443  T
Q  435 taataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  ||||||||| | ||||| |||| || |||||||||||||||||||||||    
T  47877444 tcctaacacacgtcccaaaccatccatctccaccctcgcctatcccatctct 47877495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 216 - 486
Target Start/End: Complemental strand, 235335 - 235066
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttact 315  Q
    ||||||||||||||||||| | ||||||||| |||||||| ||  ||||||||  | | ||||||||||| || ||||| || ||   |||||| ||  |    
T  235335 ccctacactcctctaccaacttttcctcccaagcccacaatcgctgacgccaccgcaacgcctccccacccacgtccacccc-aacaagaacatattcat 235237  T
Q  316 caccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttccacaccaacaatcacgccaaaaatcagtattg 415  Q
     || | |||||  ||||| |||||||||||||| ||||| ||||||||  ||||||  | ||||| ||| ||||||| ||||||||||||||| || ||     
T  235236 aactgagattgatttgttaacagccaagtcataaaggcgactaaaacggtcacacagtggaacatctccgcaccaacgatcacgccaaaaatctgttttt 235137  T
Q  416 gatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctct 486  Q
    |  |  || || || |||||  ||||||||| | ||||  | ||||| |||||||||||||||||||||||    
T  235136 gtactgtctcccaccctcctcctaacacacgtcccaaatcagccctctccaccctcgcctatcccatctct 235066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 18532707 - 18532786
Alignment:
Q  53 acctgtttatgccaaattaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacg 132  Q
    |||||||||||| | ||||||||   ||||||||||| ||| |||||||| || | |||||| |||||||||||||||||    
T  18532707 acctgtttatgcgagattaactccatattttgatgaacatgaggttgttcatgtgatgtcaacaagtcatatacaccacg 18532786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 36363738 - 36363829
Alignment:
Q  188 tcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctc 279  Q
    |||||||||| ||| |||||||| |   ||||||||||||||| ||  |||||||||||| ||||||||| | |||||||| |||| |||||    
T  36363738 tcctgcaaagaaacagtaagtaataatgccctacactcctctagcagctcttcctcccacacccacaaactatgacgccacctccacgcctc 36363829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 11277331 - 11277291
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  11277331 atagatactttgagaggaacctgtttatgccaaattaactc 11277291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 29968036 - 29968076
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  29968036 atagatactttgagaggaacctgtttatgccaaattaactc 29968076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 486
Target Start/End: Complemental strand, 11276986 - 11276876
Alignment:
Q  376 aacatttccacaccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcct 475  Q
    ||||| ||| ||||||| ||||| ||||||||| ||||  |  ||||| || || |||||  ||||||| ||| ||||| | ||||| |||||||| |||    
T  11276986 aacatctccgcaccaacgatcacaccaaaaatcggtatctgcaccatctcccaccctcctcctaacacaagacccaaaccacccctctccaccctcacct 11276887  T
Q  476 atcccatctct 486  Q
    |||||||||||    
T  11276886 atcccatctct 11276876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 11277150 - 11277072
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccac 294  Q
    ||||||||||||||||||| || |||||||| |||||||| || | |||||||  | | ||||||||||| || |||||    
T  11277150 ccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacccacatccac 11277072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 25619710 - 25619815
Alignment:
Q  219 tacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccaccaacctccacacctaagtcgaacatgttactcac 318  Q
    ||||||| |||||||  || ||||||||| |||| |||||| | ||||||| ||| ||| |||||||| ||||||| || ||   ||||||||| |||||    
T  25619710 tacactcttctaccaggtcctcctcccacacccataaacgatgccgccactaccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcac 25619808  T
Q  319 cgtgatt 325  Q
    |||||||    
T  25619809 cgtgatt 25619815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 486
Target Start/End: Complemental strand, 105771 - 105471
Alignment:
Q  186 agtcctgcaaagtaactgtaagtaaaagctccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctccccacc 285  Q
    |||||||||||| |||||| ||||| |   ||||||||||||||||||| || |||||||| |||||||| || | ||||||| || | |||||||| ||    
T  105771 agtcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcc 105672  T
Q  286 aacctccacacctaagtcgaacatgttactcaccgtgattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacgaaacatttcca 385  Q
     || ||||| || |    |||||| || || || | |||||  ||||  |||| ||||||| | ||||| ||||| || ||||| |  | ||||| ||||    
T  105671 cacatccacccccagcaggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctcca 105572  T
Q  386 caccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctc 485  Q
    ||||||||||||||||||||||||||||  |  ||||| || ||||||||  ||||||| ||| ||||| ||||||| |||||||| |||||||||||||    
T  105571 caccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccatctc 105472  T
Q  486 t 486  Q
    |    
T  105471 t 105471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 6055 - 5911
Alignment:
Q  68 attaactcagaattttgatgaagatggggttgttcttgcgctgtcaataagtcatatacaccacggactgagtacccaccaatctggtccggtaaccaaa 167  Q
    ||||||||  ||||||| |||| | |||||||||| |||| |||||  |||||||| ||||||||||| | |||||||||  |||| ||||| ||||| |    
T  6055 attaactccaaattttgttgaataaggggttgttcctgcgatgtcagcaagtcatacacaccacggaccgtgtacccaccgctctgatccggcaaccaca 5956  T
Q  168 gccacctgtcagaagaaaagtcctgcaaagtaactgtaagtaaaa 212  Q
     |||| |||||| | || | ||||||||||||||||| |||||||    
T  5955 accacatgtcagtaaaagaatcctgcaaagtaactgtgagtaaaa 5911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 3313 - 3353
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaactc 75  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  3313 atagaaactttaagaggaacctgtttatgccaaattaactc 3353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 3664 - 3764
Alignment:
Q  386 caccaacaatcacgccaaaaatcagtattggatccatcccctactctcctaataacacacgacgcaaactatccctccccaccctcgcctatcccatctc 485  Q
    ||||||||||||||||||||||| ||||  |  ||||| || || |||||  |||| || ||| ||||| | ||||| |||||||| |||||||||||||    
T  3664 caccaacaatcacgccaaaaatcggtatccgcaccatctcccaccctcctcctaacgcaggacccaaaccacccctctccaccctcacctatcccatctc 3763  T
Q  486 t 486  Q
    |    
T  3764 t 3764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 15548 - 15482
Alignment:
Q  216 ccctacactcctctaccaaatcttcctcccacgcccacaaacgacgacgccacttccatgcctcccc 282  Q
    ||||||||||||||| || ||| ||||||||||||||||| |  ||||||||| ||||  |||||||    
T  15548 ccctacactcctctaacatatcctcctcccacgcccacaatctgcgacgccacctccacccctcccc 15482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 11284 - 11247
Alignment:
Q  35 atagatactttaagaggtacctgtttatgccaaattaa 72  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  11284 atagatactttgagaggaacctgtttatgccaaattaa 11247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University