View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13842_low_1 (Length: 718)

Name: NF13842_low_1
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13842_low_1
NF13842_low_1
[»] chr8 (10 HSPs)
chr8 (18-716)||(7100378-7101080)
chr8 (32-515)||(7086780-7087263)
chr8 (117-507)||(7069799-7070189)
chr8 (524-593)||(7087320-7087389)
chr8 (191-327)||(7078397-7078533)
chr8 (25-100)||(7078231-7078306)
chr8 (181-334)||(7021085-7021238)
chr8 (231-327)||(7028695-7028791)
chr8 (231-327)||(7035397-7035493)
chr8 (523-604)||(7070253-7070331)
[»] chr4 (12 HSPs)
chr4 (196-335)||(3953034-3953173)
chr4 (180-312)||(4220718-4220850)
chr4 (196-312)||(3821496-3821612)
chr4 (197-333)||(4003233-4003369)
chr4 (197-312)||(4011712-4011827)
chr4 (181-357)||(3915970-3916146)
chr4 (181-312)||(3811908-3812039)
chr4 (197-312)||(4026469-4026584)
chr4 (218-312)||(4019530-4019624)
chr4 (245-342)||(3988170-3988267)
chr4 (214-286)||(3805802-3805874)
chr4 (249-312)||(3825804-3825867)
[»] chr5 (1 HSPs)
chr5 (196-342)||(13399073-13399219)
[»] chr6 (1 HSPs)
chr6 (262-299)||(12782174-12782211)


Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 18 - 716
Target Start/End: Original strand, 7100378 - 7101080
Alignment:
Q  18 aaatagagtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7100378 aaatagagtaaaacaaaacttacaaaaattgtgatgaatgaaaaccagagatatctgcagatttcttcaaagcagatctccactgtttcaccctacttga 7100477  T
Q  118 attgtactttttgtcatgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatc 217  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7100478 attgtactttttgtcatgttcaacaaattcatttgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaata 7100577  T
Q  218 tgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaagg 317  Q
    |||||||||||||| |||||||||||||||||||| |  |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |    
T  7100578 tgtccatctttctccctacactcaacaattttgactaactcatccaaacaccacgacgaagaagcatagttttgagagaatatgaccaaagaaatcaacg 7100677  T
Q  318 atgtttcaatagcttcaagaagtgattctgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaac 417  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7100678 atgtttcaatagtttcaagaagtgattgtgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagataaagcttcaac 7100777  T
Q  418 caaatggctaagaaaaccttcacggatatctagacctctaaagctaacaaaaacatcatgcttg--tcactttgaggaacagaacattgaaattccgatg 515  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||  |||| |||||||||| ||||||||||||||||||    
T  7100778 caaatggctaagaaaaccttcaaggatatctagacctctaaagctaacaaagacatcatacttgtctcacgttgaggaacaaaacattgaaattccgatg 7100877  T
Q  516 tcaaactgataaacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctactatacataagataagatgatata 615  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7100878 tcaaacagatacacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctactctacataagataagatgatata 7100977  T
Q  616 attaattcatgtcaaacagccatatttgactactattgcttccataaattttcccaccaattggaccactttg--tatatgtagagacagaatattcttg 713  Q
     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||| |||    
T  7100978 gttaattcatgtcaaacagctatatttgactactattgcttccataaattttcccaccaattggaccactttgtatatatatagagacagaatattattg 7101077  T
Q  714 gac 716  Q
    |||    
T  7101078 gac 7101080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 32 - 515
Target Start/End: Original strand, 7086780 - 7087263
Alignment:
Q  32 aaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactttttgt 131  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    |||||||||||||||| |  |  ||||||||||||  |    
T  7086780 aaaacttacaaaaattgtgatgaatgaaaccctgagatatctgcagatttcttcaaagagcttctccactgtttcaccttgttcaaattgtacttttgtt 7086879  T
Q  132 catgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctc 231  Q
    |||||||  ||||| ||| ||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  7086880 catgttctgcaaatgcatttgcataagtccccttctgatgcctcacaactgtagggtcaactttgtaaaaaacaggcaataaaatctgtccatctttctc 7086979  T
Q  232 tctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagct 331  Q
    |||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||| || |||||  | |||||||||||||||    
T  7086980 tctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaatagct 7087079  T
Q  332 tcaagaagtgattctgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaaccaaatggctaagaa 431  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  7087080 tcaaaaagtgattgtgctatttcatcaccttttctaagcttattgtctacaaagaaaacaatttcctttcgagataaagcttcaaccaaatgactaagaa 7087179  T
Q  432 aaccttcacggatatctagacctctaaagctaacaaaaacatcatgcttgtcactttgaggaacagaacattgaaattccgatg 515  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  7087180 aaccttcacggatgtccagacctctaaagctaacaaagacatcatgcttgtcactttgaggaactgaacattgaaattccgatg 7087263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 117 - 507
Target Start/End: Original strand, 7069799 - 7070189
Alignment:
Q  117 aattgtactttttgtcatgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaat 216  Q
    ||||||||||||  |||||||| |||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7069799 aattgtacttttgttcatgttcaacaaatgcatctgcataagttccattttgatgcctcacaattgtgggatcaactttgtagaaaacaggcaataaaat 7069898  T
Q  217 ctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaag 316  Q
     | |||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||  |     
T  7069899 gtttccatctttctctctacagtcaacaactttgaccagctcatccaaacaccaagatgaagaagcatagttttgagagaatatgactaatgaaattgaa 7069998  T
Q  317 gatgtttcaatagcttcaagaagtgattctgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaa 416  Q
    ||||||||||| ||||||| |||||| | || ||||||||  |||||| ||||||||| |||||||||| |||||||||||||| |||| | ||||| ||    
T  7069999 gatgtttcaattgcttcaaaaagtgactgtgatatttcatttccttttgtaagcttatagtctacaaagtaaacaattttcttttgagaaaaagctttaa 7070098  T
Q  417 ccaaatggctaagaaaaccttcacggatatctagacctctaaagctaacaaaaacatcatgcttgtcactttgaggaacagaacattgaaa 507  Q
     ||||||   ||||||| |||||||||||||| |||| | |||||||||||| ||||||| ||||| | |||||||||||||| |||||||    
T  7070099 tcaaatgaggaagaaaaacttcacggatatctggaccccgaaagctaacaaagacatcatacttgtgaatttgaggaacagaagattgaaa 7070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 524 - 593
Target Start/End: Original strand, 7087320 - 7087389
Alignment:
Q  524 ataaacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctact 593  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  7087320 ataaacaagagacaaacaaaaaatacaagattaatattgtgcattgtggatcttcctttgtgtctctact 7087389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 191 - 327
Target Start/End: Original strand, 7078397 - 7078533
Alignment:
Q  191 actttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagtttt 290  Q
    |||| ||||||||| |||| || ||||   |||| ||| |||||||||||||| ||||| ||||| || |||| ||||||| ||||||| ||| |||||     
T  7078397 acttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttg 7078496  T
Q  291 gagagaatatgaccaaagaaatcaaggatgtttcaat 327  Q
    |||||||||| ||||| ||||| || ||| |||||||    
T  7078497 gagagaatataaccaatgaaatgaatgatttttcaat 7078533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 7078231 - 7078306
Alignment:
Q  25 gtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccac 100  Q
    |||||| || |||||| ||||||||||||||| ||| || || |||| |||||||| |||||||||||||||||||    
T  7078231 gtaaaagaacacttacgaaaattgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccac 7078306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 181 - 334
Target Start/End: Complemental strand, 7021238 - 7021085
Alignment:
Q  181 tgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaa 280  Q
    ||||||||| |||| ||||||||| ||||||| ||||    ||| |||  |||| || ||||| ||||| ||||| |||||||||||||||  |||| |     
T  7021238 tgtaggatctacttggtagaaaactggcaatagaatcctatcatattttgctctgcaatcaactattttcacaagctcatccaaacaccaatgtgaatat 7021139  T
Q  281 gcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttca 334  Q
    | | ||||| |||||||||||||||||  ||| || ||| ||||||| ||||||    
T  7021138 gaaaagtttggagagaatatgaccaaatgaatgaatgatttttcaattgcttca 7021085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 7028791 - 7028695
Alignment:
Q  231 ctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaat 327  Q
    |||| ||||| || ||||| ||||| || ||||||||||||  |||||| ||| ||||| |||| ||||||||||| |||||||| ||| |||||||    
T  7028791 ctctgcactcgactattttcacaagctcgtccaaacaccaatgtgaagatgcaaagtttggagaaaatatgaccaatgaaatcaatgatttttcaat 7028695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 7035493 - 7035397
Alignment:
Q  231 ctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaat 327  Q
    |||| ||||| || ||||| ||||| |||||||||||||||  |||||| ||| ||||| | || ||||||||||| |||||||| ||| |||||||    
T  7035493 ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatcaatgatttttcaat 7035397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 523 - 604
Target Start/End: Original strand, 7070253 - 7070331
Alignment:
Q  523 gataaacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctactatacataagat 604  Q
    ||||||||| ||| ||||||||||| || ||||| |   ||||||||||| | |||||||||||||||||| ||||||||||    
T  7070253 gataaacaaaagacaaacaaaaaatgcacgattaat---gtgcattgtggattttcctttgtctctctactctacataagat 7070331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 196 - 335
Target Start/End: Complemental strand, 3953173 - 3953034
Alignment:
Q  196 gtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagag 295  Q
    |||||||||||| | || ||||||||||| ||||||||| |||||||  ||||| |||||||| || |||||||||  |||||||||||||||||  |||    
T  3953173 gtagaaaacaggtattacaatctgtccatttttctctctgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgag 3953074  T
Q  296 aatatgaccaaagaaatcaaggatgtttcaatagcttcaa 335  Q
    ||||||| ||| ||||| || |||  |||||| |||||||    
T  3953073 aatatgatcaatgaaatgaacgatccttcaattgcttcaa 3953034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 180 - 312
Target Start/End: Original strand, 4220718 - 4220850
Alignment:
Q  180 ttgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaaga 279  Q
    |||||||||| || | |||||||| ||| | || ||  ||||||| ||||||||| |||||||  ||||| |||||||| || |||||||||  ||||||    
T  4220718 ttgtaggatctacctcgtagaaaataggtattacaagttgtccatatttctctctgcactcaattatttttacaagttcttctaaacaccaatgtgaaga 4220817  T
Q  280 agcatagttttgagagaatatgaccaaagaaat 312  Q
    ||||||||||| ||||||||||||||| |||||    
T  4220818 agcatagttttcagagaatatgaccaatgaaat 4220850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 3821496 - 3821612
Alignment:
Q  196 gtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagag 295  Q
    |||||||| ||| |||| ||||||||||| ||||||| | ||||| |  ||||| ||||| ||||| |||||||||  |||||||||||||||||  |||    
T  3821496 gtagaaaataggtaatacaatctgtccatatttctctttgcactcgattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttttgag 3821595  T
Q  296 aatatgaccaaagaaat 312  Q
    ||||||||||| |||||    
T  3821596 aatatgaccaatgaaat 3821612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 197 - 333
Target Start/End: Original strand, 4003233 - 4003369
Alignment:
Q  197 tagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagaga 296  Q
    ||||||||||| || | |||| |||||| ||||||| | |||||||  ||||| |||||||| || |||||||||  |||||||||||||||||  ||||    
T  4003233 tagaaaacaggtaaaacaatccgtccatatttctctttgcactcaattattttcacaagttcttctaaacaccaatgtgaagaagcatagttttctgaga 4003332  T
Q  297 atatgaccaaagaaatcaaggatgtttcaatagcttc 333  Q
    |||||||||| ||||| || |||  |||||| |||||    
T  4003333 atatgaccaatgaaatgaatgatccttcaattgcttc 4003369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 4011712 - 4011827
Alignment:
Q  197 tagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagaga 296  Q
    ||||||||||| | || ||||||||||| ||||||| | |||||||  |||||  ||||||| || |||||||||  |||| ||||||||||||  ||||    
T  4011712 tagaaaacaggtattacaatctgtccatatttctctttgcactcaattattttcgcaagttcttctaaacaccaatgtgaacaagcatagttttatgaga 4011811  T
Q  297 atatgaccaaagaaat 312  Q
    |||||||||| |||||    
T  4011812 atatgaccaatgaaat 4011827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 181 - 357
Target Start/End: Complemental strand, 3916146 - 3915970
Alignment:
Q  181 tgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaa 280  Q
    ||||||||| ||  || |||||||||| | || ||| ||| ||| ||||||| |||||||||| ||||| |||||||| |  |||||||||  |||| ||    
T  3916146 tgtaggatctaccctgaagaaaacaggtattacaatttgtgcatatttctctttacactcaactattttcacaagttcttttaaacaccaatgtgaacaa 3916047  T
Q  281 gcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtgattctgctatttcatc 357  Q
    ||||||||||  |||||||||| ||| ||||| || |||  ||| || ||||||  |||||| |||| ||| |||||    
T  3916046 gcatagttttctgagaatatgatcaatgaaatgaatgatccttcgattgcttcaccaagtgaatctgatatgtcatc 3915970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 312
Target Start/End: Original strand, 3811908 - 3812039
Alignment:
Q  181 tgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaa 280  Q
    ||||||||| |||  |||||||| ||| | || ||  ||||||| | ||||| | |||||||  ||||| ||||| ||||| |||||||||  |||||||    
T  3811908 tgtaggatctactccgtagaaaataggtattacaaaatgtccatatgtctctttgcactcaattattttcacaagctcatctaaacaccaatgtgaagaa 3812007  T
Q  281 gcatagttttgagagaatatgaccaaagaaat 312  Q
    ||||||||||  |||||||||||||| |||||    
T  3812008 gcatagttttctgagaatatgaccaatgaaat 3812039  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 4026469 - 4026584
Alignment:
Q  197 tagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagaga 296  Q
    ||||||||||| | || ||||||||||| ||||||| | || ||||  ||||| | |||||| || |||||||||  |||||||||||||||||  ||||    
T  4026469 tagaaaacaggtattacaatctgtccatatttctctttgcaatcaattattttcaaaagttcttctaaacaccaacttgaagaagcatagttttctgaga 4026568  T
Q  297 atatgaccaaagaaat 312  Q
    |||||| ||| |||||    
T  4026569 atatgatcaatgaaat 4026584  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 4019530 - 4019624
Alignment:
Q  218 tgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat 312  Q
    ||||||| ||||||||| || | ||  ||| |||||||||| |||||||||||   |||||||||||||| ||| |||||||||| ||| |||||    
T  4019530 tgtccatatttctctctgcattgaagtattgtgacaagttcttccaaacaccagcgtgaagaagcatagtcttgtgagaatatgatcaaggaaat 4019624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 3988170 - 3988267
Alignment:
Q  245 attttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtga 342  Q
    ||||| ||||||||||| |||||||||  |||||||| ||| ||||  |||||||||||||| ||||| || ||   |||||| ||||||| ||||||    
T  3988170 attttcacaagttcatctaaacaccaatgtgaagaagaataattttttgagaatatgaccaatgaaattaacgagccttcaattgcttcaacaagtga 3988267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 3805802 - 3805874
Alignment:
Q  214 aatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatag 286  Q
    ||||||||||| ||||| ||| || | ||  ||| |||||||||| |||||||||||| ||||||||||||||    
T  3805802 aatctgtccatatttctttctgcattgaagtattgtgacaagttcgtccaaacaccaacatgaagaagcatag 3805874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 3825804 - 3825867
Alignment:
Q  249 tgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat 312  Q
    ||||| |||| || ||||||||| ||||||||||||||| ||| |||||||||| ||| |||||    
T  3825804 tgacatgttcttctaaacaccaacatgaagaagcatagtcttgtgagaatatgatcaaggaaat 3825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 342
Target Start/End: Original strand, 13399073 - 13399219
Alignment:
Q  196 gtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagag 295  Q
    |||||||||||| | || ||| ||||||| ||||||| | |||||||  ||||| |||||||| || |||||||||  |||||||||||||||||  |||    
T  13399073 gtagaaaacaggtattacaatttgtccatatttctctttgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgag 13399172  T
Q  296 aatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtga 342  Q
    ||||||| ||| ||||| || |||  ||| || ||||||| ||||||    
T  13399173 aatatgatcaatgaaataaatgatccttcgattgcttcaaaaagtga 13399219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 12782174 - 12782211
Alignment:
Q  262 caaacaccaagatgaagaagcatagttttgagagaata 299  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  12782174 caaacaccaagttgaagaagcatagtttttagagaata 12782211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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