View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13842_low_10 (Length: 412)
Name: NF13842_low_10
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 3612780 - 3613169
Alignment:
| Q |
19 |
attttcacccattatccttctcatttaatacataaatctttacgcttccttcctcttgttttggggtttgcacaatctttaagtgcaatattgacccttc |
118 |
Q |
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| T |
3612780 |
attttcacccattatccttctcatttaatacataaatctttacgcttccttcctcttgttttggggtttgcacaatctttaactgcaatattgacccttc |
3612879 |
T |
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| Q |
119 |
atgtctctcaaatcacgcctatttatttaaccttcagttgc------acttgcactagtcttccagcaaatcctccaaaagtgataaagccaaaaacaaa |
212 |
Q |
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| T |
3612880 |
atgtctctcaaatcacgcctatttatttaaccttcagttgcacttgcacttgcactagtcttccatcaaatcctccaaaagtgataaagccaaaaacaaa |
3612979 |
T |
|
| Q |
213 |
taatattttccttttttaccctcctttttatcgatacaatggccaatactaagcatgaatctgcaaattttcttgaccaaatattagctactgatgaggc |
312 |
Q |
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| T |
3612980 |
taatattttccttttttaccctcctttttatcgatacaatggccaatactaagcatgaatctgcaaattttcttgaccaaatactagctactgatgaggc |
3613079 |
T |
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| Q |
313 |
acgacatgtatatgcattagcaaaagagcgccaggctgctcaagttgggattgctaacaatgttatctctgctgatttgtgtgatgatgt |
402 |
Q |
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| T |
3613080 |
acgacatgtatatgcatttgcaaaagagcgccaggctgctcaagttgggattgctaacaatggtatctctgctgatttgtgtgatgatgt |
3613169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 14756846 - 14757037
Alignment:
| Q |
29 |
attatccttctcatttaatacataaatctttacgcttccttcctcttgttttggggtttgcacaatctttaagtgcaatattgacccttcatgtctctca |
128 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
14756846 |
attatccttctcatttaatacataaatcattacacttccttcctcttgttttggggtttgcacaatctttaactgcaatattgatccttcatgtctctgt |
14756945 |
T |
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| Q |
129 |
aatcacgcctatttatttaaccttcagttgcacttgcactagtcttccagcaaatcctccaaaagtgataaagccaaaaacaaataatattttccttt |
226 |
Q |
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| T |
14756946 |
aatcatgcctatttatttaaccttc--tt----ttgcaccagtcttccatccaatcctccaaaagtgataaagccaaaaacaaattatattttccttt |
14757037 |
T |
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