View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13842_low_15 (Length: 324)
Name: NF13842_low_15
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 91 - 309
Target Start/End: Complemental strand, 31265253 - 31265041
Alignment:
| Q |
91 |
gtgtttgcacactgtcaacatgcccatgccatataagacgctccttatggccataatattgttctccaatcttaggcgaagtaaggctttctccattatg |
190 |
Q |
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| T |
31265253 |
gtgtttgcacactgtcaacatgcc------atataatacgctccttatggccataatattgttctccaatcttaggcgaagtaaggctttctccattatg |
31265160 |
T |
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| Q |
191 |
tcgaacttattgaagatacagtaggagaaaaaagagtgatagagacaaactaaaaactgaagattaaatggtgacaaatttgtaaaatagttgaaaaatg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31265159 |
tcgaacttattgaagatacagtaggagaaaaaagagtgatagagacaaactaaaaactgaagattaaatggtgacaaatttgtaaaatagttgaaaaatg |
31265060 |
T |
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| Q |
291 |
cactttttatctggttaat |
309 |
Q |
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|||||||||||| |||||| |
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| T |
31265059 |
cactttttatctagttaat |
31265041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 27084152 - 27084203
Alignment:
| Q |
15 |
atactacttcatgtgaaattcatttttaaaataccaaatttgcatgaatttc |
66 |
Q |
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|||||||||||||||||| ||| ||||||||||||||| ||||||||||||| |
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| T |
27084152 |
atactacttcatgtgaaactcacttttaaaataccaaacttgcatgaatttc |
27084203 |
T |
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