View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13842_low_16 (Length: 284)
Name: NF13842_low_16
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 3724318 - 3724068
Alignment:
| Q |
20 |
aatgaggcttcttgacttcattcgtagagaacaattttacctttcaccaacttattcaacatgttggttgaaaaacaaatacaattttagaataatttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3724318 |
aatgaggcttcttgacttcattcgtagaaaacaattttacctttcaccaacttattcaacatgttggttgaaaaacaaatacaattttagaataatttca |
3724219 |
T |
|
| Q |
120 |
tcgacaaatcattgcttttcaaagtttttctatactcaataatgctcattttggagcaaatattattatttgtagcattaagttgaatatttttattatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3724218 |
tcgacaaatcattgcttttcaaagtttttctatactcaataatgctcattttggagcaaatattattatttgtagcattaagttgaatatttttattatt |
3724119 |
T |
|
| Q |
220 |
ttaaaaagtcaaagtattttaactttagtccctttaaaatatgttattcat |
270 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
3724118 |
ttaaaaagtcgaagtattttaacttcagtccctataaaagatgttattcat |
3724068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 3726187 - 3725944
Alignment:
| Q |
26 |
gcttcttgacttcattcgtagagaacaattttacctttcaccaacttat---tcaacatgttggttgaaaaacaaatacaattttagaataatttcatcg |
122 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||||| |||| |||||||| ||||| |||||| || ||| |||||||||||||||||||| |
|
|
| T |
3726187 |
gcttcttcacttccttcatagagaacaattttacccttcatcaacttatcattcaacgcgttggtagagcgacacatacaattttagaataattttgcta |
3726088 |
T |
|
| Q |
123 |
acaaatcattgcttttcaaagtttttctatactcaataatgctcattttggagcaaatattattatttgtagcattaagttgaatatttttattatttta |
222 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||| | |||||||||| | ||||||||||||| ||||| |||| |||| |||||||||||| | || || |
|
|
| T |
3726087 |
acaaataattgattttcaaagtttttctctactcga-aatgctcattatagagcaaatattatcatttgaagcactaagctgaatatttttaatgttcta |
3725989 |
T |
|
| Q |
223 |
aaaagtcaaagtattttaactttagtccctttaaaatatgttatt |
267 |
Q |
| |
|
|||| |||| |||||||||||| |||| || ||||| ||||||| |
|
|
| T |
3725988 |
aaaaatcaaggtattttaacttcagtctctataaaaggtgttatt |
3725944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 3721563 - 3721481
Alignment:
| Q |
130 |
attgcttttcaaagttttt-ctatactcaataatgctcattttggagcaaatattattatttgtagcattaagttgaatattt |
211 |
Q |
| |
|
|||| |||||||||||||| || || ||| | || || ||||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
3721563 |
attgattttcaaagttttttctctattcagttattctaattttggagcaaagattattatttttagcattaagttaaatattt |
3721481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University