View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13842_low_2 (Length: 695)
Name: NF13842_low_2
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 275 - 692
Target Start/End: Original strand, 18342180 - 18342592
Alignment:
| Q |
275 |
tagtctaaccaagctcttccggtcccgaccgtagtctaaccaagcgcgcaataataatccttgccaggattcaggcagctgatcaatctcgtgcgctcat |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
18342180 |
tagtctaaccaagctcttccggtcccgaccgtagtctaaacaagcgcgcaataataatccttgccagaattcaggcagctgatcaatctggtgcgctcat |
18342279 |
T |
|
| Q |
375 |
acacacgacagtggacttacacattcctcaatgcaaatctatatgtattctcaatcaaaccatgtcacctagtttgagtgccagttaccacaaataacat |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
18342280 |
acacacgacagtggacttacacattcctcaatgcaaatctatatgtactctcaatcaaaccatgtcacctaatttgagtgccagttaccacgaataacat |
18342379 |
T |
|
| Q |
475 |
caaagtatcttaatcattctttcctcacataaaccttacttatacctagtaaaatacaatgaagagtatggttgacttcccaggtaagagaggcagaccg |
574 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
18342380 |
caaagtatcttaatcattctttcctcacataaagcttacttatacctagtaaaatacaatgaagagtatggttgattttccaggtaagagaggcagaccg |
18342479 |
T |
|
| Q |
575 |
taaacgacatagtctgccaagtcttttttagcaagaacccaatcaaatacaactactcaagatatttcacttcccttgggaatcttaaacttaatgtcta |
674 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
18342480 |
taaacgacatagtctaccaagtcttttctagcaagaacccaatcgaat-----tactcaagatatttcacttcccttgagaatcttaaacttaatatcta |
18342574 |
T |
|
| Q |
675 |
acgatgttcttctctctc |
692 |
Q |
| |
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|| |||||||| |||||| |
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| T |
18342575 |
acaatgttcttatctctc |
18342592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 18341889 - 18342193
Alignment:
| Q |
13 |
catcatattcaacttaatcattgctctctcaaagtctatatctccaaacataacatctatgttcttatgcatttcaaaactatatgcagactgaggcctt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18341889 |
catcatattcaacttaatcattgctctctcaaagtctat--ctccaaacataacatctatgttcttatgcatttcaaaactatatgcagactcaggcctt |
18341986 |
T |
|
| Q |
113 |
tagacgttatcaaggatatcttcccaattactgagatcaaatatcacaaaatcacatgccaaaaacgtcctcccatttaccaacagcaacgccacctaac |
212 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || || ||||| ||||||| |
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| T |
18341987 |
tagacgttatcaaggatatcctcccaattactgagatcaaatatcacaaaaccacatgccataaacgtcctcccatttactaagagaaacgctacctaac |
18342086 |
T |
|
| Q |
213 |
ttcactttgagtccaagtgttataagtcgatcgtccctactcagaatttccagtcccaactatagtctaaccaagctcttccggtcccgaccgtagtcta |
312 |
Q |
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||||| | ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18342087 |
ttcacgtggagtccaagtgttataagttgatcgtccctactcagaatatccagtcccaactatagtctaaccaagctcttcctgtcccgaccgtagtcta |
18342186 |
T |
|
| Q |
313 |
accaagc |
319 |
Q |
| |
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||||||| |
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|
| T |
18342187 |
accaagc |
18342193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 9e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 16341372 - 16341675
Alignment:
| Q |
13 |
catcatattcaacttaatcattgctctctcaaagtctatatctccaaacataacatctatgttcttatgcatttcaaaactatatgcagactgaggcctt |
112 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| || | | ||||||||||| ||||||||||| |||| |||| |||||||| |||| ||| ||| |
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| T |
16341372 |
catcatattcaacttaattatttctctctcaaagtcgat--cccaaaacataacatatatgttcttatccattccaaa-ctatatgctgactcaggtctt |
16341468 |
T |
|
| Q |
113 |
tagacgttatcaaggatatcttcccaattactgagatcaaatatcacaaaatcacatgccaaaaacgtcctcccatttaccaacagcaacgccacctaac |
212 |
Q |
| |
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|||||| | ||||||| ||| ||||||||| |||||| ||||||||| | ||||||||| ||||||| ||||||||||||| ||| || |||||| || |
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| T |
16341469 |
tagacgctgtcaaggacatccacccaattaccaagatcagatatcacaagaccacatgccacaaacgtcatcccatttaccaagagcgacaccacctgac |
16341568 |
T |
|
| Q |
213 |
ttcactttgagtccaagtgttataagtcgatcgtccctactcagaatttccagtcccaactatagtctaaccaagctcttccggtcccgaccgtagtcta |
312 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16341569 |
ttcacaaggagtccaagtgttataagtcgatcgcccctactcagaatatccggtcccgactatagtctaaccaagctcttccggtcccgaccatagtcta |
16341668 |
T |
|
| Q |
313 |
accaagc |
319 |
Q |
| |
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||||||| |
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|
| T |
16341669 |
accaagc |
16341675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 441 - 679
Target Start/End: Original strand, 16341872 - 16342112
Alignment:
| Q |
441 |
acctagtttgagtgccagttaccacaaataacatcaaagtatcttaatcattctttcctcacataaaccttacttatacctagtaaaatacaatgaagag |
540 |
Q |
| |
|
|||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |||||| || |
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| T |
16341872 |
acctagtttgagtgtcggttaccatctataacctcaaagtatcttaatcattctttcctcacataaaccttatttttacccagtaaaatagaatgaatag |
16341971 |
T |
|
| Q |
541 |
t--atggttgacttcccaggtaagagaggcagaccgtaaacgacatagtctgccaagtcttttttagcaagaacccaatcaaatacaactactcaagata |
638 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||| | |||||||||||||||| || |
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| T |
16341972 |
tgtatggttgacttcccaggtaagagaggcagaccgtaaacgacatagtccaccaagtctttccttgccagaacccaaccgaatacaactactcaaggta |
16342071 |
T |
|
| Q |
639 |
tttcacttcccttgggaatcttaaacttaatgtctaacgat |
679 |
Q |
| |
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|| ||||| | ||||| ||| |||||||||| ||||||||| |
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| T |
16342072 |
ttccactttctttggggatcataaacttaatatctaacgat |
16342112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 16341647 - 16341740
Alignment:
| Q |
260 |
ttccagtcccaactatagtctaaccaagctcttccggtccc-gaccgtagtctaaccaagcgcgcaataataatccttgccaggattcaggcag |
352 |
Q |
| |
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|||| ||||| || |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
16341647 |
ttccggtcccgaccatagtctaaccaagctcttctggtccccgactatagtctaaccaagcgcgcaataataatcctcatcaggattccggcag |
16341740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 16341738 - 16341793
Alignment:
| Q |
383 |
cagtggacttacacattcctcaatgcaaatctatatgtattctcaatcaaaccatg |
438 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
16341738 |
cagtggacttacacattcctcaatgcaaatctatatgcgctctcaatcaaaccatg |
16341793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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