View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13842_low_20 (Length: 240)
Name: NF13842_low_20
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 50591773 - 50591997
Alignment:
| Q |
1 |
ttttctaattctatttgtaagggtatatcatgaccatgtgccatgtgttgtagtgtataattatgcattgaaccattaagtgtcaagcgttgtttgattg |
100 |
Q |
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| T |
50591773 |
ttttctaattctatttgtaagggtatatcatgaccatgtgccatgtgttgtagtgtataattatgcattgaaccattaagtgtcaagcgttgtttgattg |
50591872 |
T |
|
| Q |
101 |
ctttggttctttatgtgtatttgttgtaatatatttgtggttttcaattaaaagtttgctatattatcttagttgctaaactctctttgttgctacactc |
200 |
Q |
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| T |
50591873 |
ctttggttctttatgtgtattagttgtaatatatttgtggttttcaattaaaagtttgctatattatcttagttgctaaactctctttgttgctacaccc |
50591972 |
T |
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| Q |
201 |
tttttaccttgatgcacgtcatata |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
50591973 |
tttttaccttgatgcacgtcatata |
50591997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 35719902 - 35719785
Alignment:
| Q |
107 |
ttctttatgtgtatttgttgtaatatatttgtggttttcaattaaaagtttgctatattatcttagttgctaaactctctttgttgctacactcttttta |
206 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
35719902 |
ttctttacgtgtatctgttgtaatatatttgtggttttcaattaaaagtttgttatattattttagttgctaaactctctttattgctacatgcttttta |
35719803 |
T |
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| Q |
207 |
ccttgatgcacgtcatat |
224 |
Q |
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| T |
35719802 |
ccttgatgcatgtcatat |
35719785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 36413119 - 36413056
Alignment:
| Q |
121 |
ttgttgtaatatatttgtggttttcaattaaaagtttgctatattatcttagttgctaaactct |
184 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
36413119 |
ttgttgtgatatatttgtgattttcaattaaaagtttgctatattatactagttgttaaactct |
36413056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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