View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13842_low_23 (Length: 227)
Name: NF13842_low_23
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_23 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 42975037 - 42974807
Alignment:
| Q |
3 |
aattccaatccagaaagcacccatagctaatagctatgagttgagtctagccaataaaaaacataaattacatgacgataatcatagcaagtgtacattc |
102 |
Q |
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| T |
42975037 |
aattccaatcgagaaagcacccatagctaatagctatgagttgagtctagccaataaaaaacataaattacatgacgataatcatagcaagtgtacattc |
42974938 |
T |
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| Q |
103 |
attggctcactggtgttccaagctcaaaggaacaaaagacaaactccaacaacaaagcttc------atgctctaatttacagtcaagcaagcaagctag |
196 |
Q |
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| T |
42974937 |
attggctcactggtgttccaagctcaaaggaacaaaagacaaactccaacaacaaagcttcatgcatatgcgctaatttacagtcaagcaagcaagctag |
42974838 |
T |
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| Q |
197 |
ctttgagctatacatttatgattctaactct |
227 |
Q |
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| T |
42974837 |
ctttgagctatacatttatgattctaactct |
42974807 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 9459317 - 9459243
Alignment:
| Q |
92 |
agtgtacattcattggctcactggtgttccaagctcaaaggaacaaaagacaaactccaacaacaaagcttcatg |
166 |
Q |
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|||||||||||||||||||| ||| |||| ||||| ||| |||||| ||| ||||| ||||||||| |||||| |
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| T |
9459317 |
agtgtacattcattggctcatcggttttcctagctcgaagaaacaaatgacgaactcttacaacaaagtttcatg |
9459243 |
T |
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