View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13842_low_3 (Length: 647)
Name: NF13842_low_3
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 10 - 630
Target Start/End: Original strand, 36313155 - 36313775
Alignment:
| Q |
10 |
attatcctccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaaggtacccttgtacaaattccttgtccacgtggcaagctg |
109 |
Q |
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| T |
36313155 |
attatactccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaaggtacccttgtacaaattccttgtccacgtggcaagctg |
36313254 |
T |
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| Q |
110 |
ataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctggattccctctttggcaatgttgagac |
209 |
Q |
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| T |
36313255 |
ataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctggattccctctttggcaatgttgagac |
36313354 |
T |
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| Q |
210 |
gccttagattttcaagagcatcaagcactggacgtatcttctcattataagaagatacaattggtgcaatagatagaggttgaggttgatcaacatcaac |
309 |
Q |
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| T |
36313355 |
gccttagattttcaagagcatcaagcactggacgtatcttctcattataagaagatacaattggtgcaatagatagaggttgaggttgatcaacatcaac |
36313454 |
T |
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| Q |
310 |
atggactaatacaagtgatgatgattcatcaagtttgtttgcctttgtggaactcttgtttccaattgccatttttaggacaagtgatactgtgatggga |
409 |
Q |
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| T |
36313455 |
atggactaatacaagtgatgatgattcatcaagtttgtttgcctttgtggaactcttgtttccaattgtcatttttaggacaagtgatactgtgatggga |
36313554 |
T |
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| Q |
410 |
tgcaaatagtatagtactaaacctttggtgagattgtgatgaacaaagatttagcttaaatgcatatttatagagagaggagagcctaaagggaaaacga |
509 |
Q |
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| T |
36313555 |
tgcaaatagtatagtactaaacctttggtgagattgtgatgaacaaagatttagcttaaatgcatatttatagagagaggagagcctaaagggaaaacga |
36313654 |
T |
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| Q |
510 |
aatgaaatgatagatttgagggtagtttggtatcttgcacaaggcttttcaaagggaattggagttacttagccttgcaggttagttgggatttgggacc |
609 |
Q |
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| T |
36313655 |
aatgaaatgatagatttgagggtagtttggtatcttgcacaaggcttttcaaagggaattggagttacttagccttgcaggttagttgggatttgggacc |
36313754 |
T |
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| Q |
610 |
ggctctctttgaggtgggaat |
630 |
Q |
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| T |
36313755 |
ggctctctttgaggtgggaat |
36313775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 86 - 278
Target Start/End: Original strand, 36290748 - 36290940
Alignment:
| Q |
86 |
attccttgtccacgtggcaagctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctgga |
185 |
Q |
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| T |
36290748 |
attccttgtccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattgttggaagctgaa |
36290847 |
T |
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| Q |
186 |
ttccctctttggcaatgttgagacgccttagattttcaagagcatcaagcactggacgtatcttctcattataagaagatacaattggtgcaa |
278 |
Q |
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| T |
36290848 |
ttccttctttggcaatgttgagacgccttagattctcaagggcatcgagaactggacgtattttttcattgtatgatgaaacaattggtgcaa |
36290940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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