View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13842_low_6 (Length: 540)
Name: NF13842_low_6
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Original strand, 25813928 - 25814380
Alignment:
| Q |
11 |
acatcatcaactgagttgtggtttcaaaagaaactctacaaatgcagacatatgattcgtgaggctataaattctgatggatactgggtactaagaagat |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
25813928 |
acatcattaactgagttgtggtttcaaaagaaactctacaaatgcagacatatgattcgtgaggctattaattctgatggatactgagtactaagaagat |
25814027 |
T |
|
| Q |
111 |
cgtggccaaataatttggtatactcaaaggtatgtgttgatcaatttgaagcatgcaaagaaccacaactaaagaaaggtctttggtgggcgaattcaga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25814028 |
cgtggccaaataatttggtatactcaaaggtatgtgttgatcaatttgaagcatgcaaagaacaacaactaaagaaaggtctttggtgggcgaattcaga |
25814127 |
T |
|
| Q |
211 |
tgaggactacgaattcgacacttgcattaattgtcgtcttgacttggaagtggattggttcctgaaagaagtgaagtacgaccctcctcaacaaccataa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25814128 |
tgaggactacgaattcgacacttgcattaattgtcgtcttgacttggaagtggattggttcctgaaagaagtgaagtacgaccctcctcaacaaccataa |
25814227 |
T |
|
| Q |
311 |
ttggttggataagtagtcatggattttt---------------------taagtttgttaagtgcgtactaatattctgttttgtaaaattttatctaca |
389 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25814228 |
ttggatggataagtagtcatggattttttaagtttgtcatagatttttataagtttgttaagtgcgtactaatattctgttttgtaaaattttatataca |
25814327 |
T |
|
| Q |
390 |
atgtatgtctgcaagcatgttaaggttaaaactgctaccaagtctattttatgtt |
444 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25814328 |
atgtatg--tgcaagcatgttaaggttaaaactgctaccaagtctattttatgtt |
25814380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 436 - 491
Target Start/End: Original strand, 25814786 - 25814841
Alignment:
| Q |
436 |
ttttatgttttaattaaaaatgttgtccagtatttccaacccaattatgttgatcc |
491 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25814786 |
ttttaggttttaattaaaaatgttgtccagtatttccaacccaattatgttgatcc |
25814841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University