View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13842_low_8 (Length: 482)
Name: NF13842_low_8
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 2673669 - 2673467
Alignment:
| Q |
19 |
cttctccttcaagctctcttcctccattaatggagtttatcctatatctttcacatggtatcagtgccctgtaatggggtcctgccattgttgctgcatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2673669 |
cttctccttcaagctctcttcctccattaatggagtttatgctatatctttcacatgatatcagtgccctgtaatggggtcctgccattgttgctgcatt |
2673570 |
T |
|
| Q |
119 |
ttttctcaaatatccacaaaactcaattctcatgattgattttctttcttccttcttcaatttcatcgaaattgcattcnnnnnnngattaataactgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2673569 |
ttttctcaaatatccacaaaactcaattctcataattgattttctttcttccgtcttcaatttcatcgaaattgcattcttttcttgattaataactgaa |
2673470 |
T |
|
| Q |
219 |
tca |
221 |
Q |
| |
|
||| |
|
|
| T |
2673469 |
tca |
2673467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 289 - 464
Target Start/End: Complemental strand, 2673398 - 2673215
Alignment:
| Q |
289 |
gtgtttcttatgttattcttgtgcatcatgtctatggatagcacaaccggtagtgttaatggtggacacacttcttctcattgaatccctatttcatgca |
388 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2673398 |
gtgtttcttatgtttttcttgtgcatcatgtctatggatagcacaaccggtagtgttaatggtggacacacttcttctcattgaatccctatttcatgca |
2673299 |
T |
|
| Q |
389 |
ccccaatgaaaatctgg--------gtaatgttgtttctactcctctgttgaacggaaccaactaccattcttggtctcgttct |
464 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2673298 |
ccccaatgaaaatctgggcaatgttgcaatgttgtttctactcctctgttgaacggaaccaactaccattcttggtctcgttct |
2673215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 27506582 - 27506626
Alignment:
| Q |
20 |
ttctccttcaagctctcttcctccattaatggagtttatcctata |
64 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
27506582 |
ttctccttcaagctttcttcctccattgatggagtttatgctata |
27506626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 46649509 - 46649561
Alignment:
| Q |
307 |
ttgtgcatcatgtctatggatagcacaaccggtagtgttaatggtggacacac |
359 |
Q |
| |
|
|||||| ||||||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
46649509 |
ttgtgcgtcatgtctatggatagcactgcaggaagtgttaatggtggacacac |
46649561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University