View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13842_low_9 (Length: 434)
Name: NF13842_low_9
Description: NF13842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13842_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 74 - 418
Target Start/End: Original strand, 24985262 - 24985606
Alignment:
| Q |
74 |
gtaggattgtggagagtgtaggggaaggagtgaatgacttgaaagaaaatgacaaggtggtgctaatattcaatggtgagtgtggtgagtgtaagtgttg |
173 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24985262 |
gtaggattgtggaaagtgtaggggaaggagtgaatgacatgaaagaaaatgacaaagtggtgctaatattcaatggtgagtgtggtgagtgtaagtgctg |
24985361 |
T |
|
| Q |
174 |
catgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagattttcttcaatagatggcaaa |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24985362 |
catgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagattttcttcaatagatggcaaa |
24985461 |
T |
|
| Q |
274 |
cccatttttcatttcttgaacacttcaactttcactgagtatacagtggtggattcagcttgtgctgttaagctcaacactgaagataaccttagtctca |
373 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24985462 |
cccatttttcatttcttgaatacttcaactttcactgagtatacagtggtggattcagcttgtgctgttaagctcaacactgaagataaccttagtctca |
24985561 |
T |
|
| Q |
374 |
aaaaactcaccttgcttagttgtggagtttccacaggtatgtttc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24985562 |
aaaaactcaccttgcttagttgtggagtttccacaggtatgtttc |
24985606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 74 - 412
Target Start/End: Original strand, 24993181 - 24993519
Alignment:
| Q |
74 |
gtaggattgtggagagtgtaggggaaggagtgaatgacttgaaagaaaatgacaaggtggtgctaatattcaatggtgagtgtggtgagtgtaagtgttg |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||| || ||||||| || ||||||||||||||||| | || |
|
|
| T |
24993181 |
gtaggattgtggagagtgtaggggaaggagtgaaagacttaaacgaaaatgacaaagtggtgatagtattcaacggggagtgtggtgagtgtaactactg |
24993280 |
T |
|
| Q |
174 |
catgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagattttcttcaatagatggcaaa |
273 |
Q |
| |
|
|| ||| |||||||||||||||||||||| | ||| ||| |||||||||||| ||||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
24993281 |
caagtgtgagaaaaccaacatgtgtgagaagtatggtgtaaacccaatgaagagactaatgtgtgatggtacaagtagattctctacaatagatggcaaa |
24993380 |
T |
|
| Q |
274 |
cccatttttcatttcttgaacacttcaactttcactgagtatacagtggtggattcagcttgtgctgttaagctcaacactgaagataaccttagtctca |
373 |
Q |
| |
|
| ||||| |||||||||||| ||||||||||||| ||||| |||||||| ||||||| ||||||| ||||||||||||||||||| | |||||||||| |
|
|
| T |
24993381 |
ctcatttaccatttcttgaactcttcaactttcacggagtacacagtggtcgattcaggttgtgctcttaagctcaacactgaagacattcttagtctca |
24993480 |
T |
|
| Q |
374 |
aaaaactcaccttgcttagttgtggagtttccacaggta |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24993481 |
aaaaactcaccttgcttagttgtggagtttccacaggta |
24993519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 24985182 - 24985229
Alignment:
| Q |
15 |
taacatcaaatcaaataatattgaacctataatgttgacttaattatg |
62 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24985182 |
taacatcaaatcaagtaatattgaacctataatgttgacttaattatg |
24985229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University