View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13843_high_5 (Length: 319)
Name: NF13843_high_5
Description: NF13843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13843_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 41341970 - 41342187
Alignment:
| Q |
10 |
agcagaacctgtgaatttattacatctttcaacattactgtattgaaccaaccaattagttcaaagagagaaaataaaaatattaaattacagcaccaga |
109 |
Q |
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| T |
41341970 |
agcagcacctgtgattttattacatctttcaacattactgtattgaaccaaacaattagttcaaagagagaaaataaaaatattaaattacagcaccaga |
41342069 |
T |
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| Q |
110 |
ggatggtcccatgtaacttgctgacctcttgaattgcaggtaaaaacttcttggcaggttgaaatggaacttcattgccctgaaaattaacatcaaatat |
209 |
Q |
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| T |
41342070 |
agatggtcccatgtaacttgctgacctcttgaattgcaggtaaaaacttcttggcaggttgaaatggaacttcattgccctgaaaattaacatc-aatat |
41342168 |
T |
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| Q |
210 |
caaatgctttattttataa |
228 |
Q |
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| T |
41342169 |
caaatgctttattttataa |
41342187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 41342185 - 41342219
Alignment:
| Q |
285 |
taagaatcaaatgctctaattaaaaatggttaaag |
319 |
Q |
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| T |
41342185 |
taagaatcaaatgctctaattaaaaatggttaaag |
41342219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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