View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13844_low_1 (Length: 698)
Name: NF13844_low_1
Description: NF13844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13844_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 11299325 - 11298641
Alignment:
| Q |
1 |
ggagggaagcaagtgtttgattcttcagccttggccacccttttgaaaggagtaagatcaacaattgaagtggaacaaaacaatgtcgttgttattgata |
100 |
Q |
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| T |
11299325 |
ggagggaagcaagtgtttgattcttcagccttggccacccttttgaaaggagtaagatcaacaattgatgtggaacaaaacaatgtcgttgttgttgata |
11299226 |
T |
|
| Q |
101 |
accaattgaatgaagaagaaaaaatgaaattggagaaattgcagcaaatcagaatcaaattcttgagactatttctaaggcttggtttgactacacagga |
200 |
Q |
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| T |
11299225 |
accaattgaatgaagaagaaaaaatgaaattggagaaattgcagcaaatcagaatcaaattcttgagactagttctaaggcttggtttgactacacagga |
11299126 |
T |
|
| Q |
201 |
atcaattgcagcccaagtgcttcaaaggttaacccttattgctgctggaagggatccaagacaaactagtcaaatattcaatcttaatgctgctgaggaa |
300 |
Q |
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| T |
11299125 |
atcaattgcagcccaagtgcttcaaaggttaacccttattgcttctggaagggatccaagacaaactagtcaaatattcaatcttaatgctgctgaggaa |
11299026 |
T |
|
| Q |
301 |
agtgctttcaatcttgaagctaggggagaaattttgaaccattctttgaatgtactagttcttgggaaatcagttgtgggaaaaagtgctactataaatt |
400 |
Q |
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| T |
11299025 |
agtgctttcaatcttgaagctaggggagaaattttgaaccattctttgaatgtactagttctcgggaaatcaggtgtgggaaaaagtgctactataaatt |
11298926 |
T |
|
| Q |
401 |
caatctttggtaaagtgaggaccaaaattagtgcatatggttctgcaaccaattctattaaagagattgttgggatggttgatggagttagcattagggt |
500 |
Q |
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| T |
11298925 |
caatctttggtaaagtgaagaccaaaattagtgcatatggttctgcaaccaattctattaaagagattgttgggatggttgatggagttagcattaggat |
11298826 |
T |
|
| Q |
501 |
ttttgatactcctggtttgaaatcttctgcattggaacagtgttacaacaagaaagttttatctatgattccaaagttaacaaagaaaaaaccaattgac |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
11298825 |
ttttgatactcctggtttgaaatcttctgcattggaacagtgttacaacaagaaagttttatctatgattcaaaagttaacaaagaaaaaaccacttgat |
11298726 |
T |
|
| Q |
601 |
attgttctctatgtcgaccgtctcgacatacaaactaagaatctcaacgatttaccattgttgagaacaatttgtgatgtatttg |
685 |
Q |
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| T |
11298725 |
attgttctctatgtcgaccgtctcgacatacaaactaagaatctcaatgatttaccactgttgagaacaatttgtaatgtatttg |
11298641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 550
Target Start/End: Original strand, 36607852 - 36608026
Alignment:
| Q |
376 |
gtgggaaaaagtgctactataaattcaatctttggtaaagtgaggaccaaaattagtgcatatggttctgcaaccaattctattaaagagattgttggga |
475 |
Q |
| |
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|||||||| |||||||| ||||||||||| |||||| || | ||||| | |||||||||||| | || || | | || | | ||| |||||||| | |
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| T |
36607852 |
gtgggaaagagtgctacgataaattcaatttttggtgaaaccaagaccagcttcagtgcatatggtcccgctactactgctgtgacagaaattgttggaa |
36607951 |
T |
|
| Q |
476 |
tggttgatggagttagcattagggtttttgatactcctggtttgaaatcttctgcattggaacagtgttacaaca |
550 |
Q |
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| T |
36607952 |
tggttgatggagtgaaagtaagggtctttgacacaccaggtttgaaatcttctgcatttgaacaaagttacaaca |
36608026 |
T |
|
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