View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13844_low_2 (Length: 652)
Name: NF13844_low_2
Description: NF13844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13844_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 598; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 25 - 637
Target Start/End: Complemental strand, 18935114 - 18934501
Alignment:
| Q |
25 |
ttagatagaaacaaatagaattgttaagagcaattattaaaagatgactattagcctttcctcctaacaaatatgaacctctcttcatcatattgaagtt |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18935114 |
ttagatagaaacaaatagaattgttaagagcaattattaaaagatgactattagcctttcctcctaacaaatattaacctctcttcatcatattgaagtt |
18935015 |
T |
|
| Q |
125 |
ttagcaaaaataccaggtcagggagatgatttaactt-gagtaaactaatgatagtaattttaggacttccaatagagatgaatggacgtcctattgagg |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18935014 |
ttagcaaaaataccaggtcagggagatgatttaactttgagtaaactaatgatagtaattttaggacttccaatagagatgaatggacgtcctattgagg |
18934915 |
T |
|
| Q |
224 |
atgtccaacttttttccccttggttctttcctatttttgtatagctgagtattcttgcaagtatatgatgtgtaagagtaagaggaccctctctactctg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18934914 |
atgtccaacttttttccccttggttctttcctatttttgtatagctgagtattcttgcaagtatatgatgtgtaagagtaagaggaccctctctactctg |
18934815 |
T |
|
| Q |
324 |
tcttttattattttgatttccttataagaaaaataattaagtagatgtacagtgaaccattgaagtgaactcctgtttattacttctaagagaaaaatta |
423 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18934814 |
tcttttattattttgatttccttataagaaaaataattaagtagatgtacagtgaaccattgaagtgaactcctgtttattacttctaagagaaaaatta |
18934715 |
T |
|
| Q |
424 |
attagtatcgaaacaagatcaagaagaaaactaaacttgtacctgggacttcctccacactcgttccagattggaatattttaagtcaacagccacaata |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18934714 |
attagtatcgaaacaagatcaagaagaaaactaaacttgtacctgggacttcctccacactcgttccagattggaatattttaagtcaacagccacgata |
18934615 |
T |
|
| Q |
524 |
cattcttgatgaaagtcagctggtgtacattttaaaggaaatccatgccaacaaagcaatataagatctttcgaaagatatttgtaatctccattaagtt |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18934614 |
cattcttgatgaaagtcagctggtgtacattttaaaggaaatccatgccaacaaagcaatataagatctttcgaaagatatttgtaatctccattaagtt |
18934515 |
T |
|
| Q |
624 |
gtacaccagaaagt |
637 |
Q |
| |
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|||||||||||||| |
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| T |
18934514 |
gtacaccagaaagt |
18934501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 330 - 632
Target Start/End: Original strand, 34725984 - 34726284
Alignment:
| Q |
330 |
attattttgatttccttataagaaaaataattaagtagatgtacagtgaaccattgaagtgaactcctgtttattacttctaagagaaaaattaattagt |
429 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||| | | || |||| || |||| ||||||| ||| |||||||||| || || || ||| | |
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| T |
34725984 |
attattttgattgcctaataagaaatataattaagtataagaactatgaaacactgaactgaactcaagttagttacttctaaaaggaagat--attcat |
34726081 |
T |
|
| Q |
430 |
atcgaaacaagatcaagaagaaaactaaacttgtacctgggacttcctccacactcgttccagattggaatattttaagtcaacagccacaatacattct |
529 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||||||||||||| |||||||| |||| |||| |||||||||||| |||||||| || | | |||| |
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| T |
34726082 |
atcgaaactagatcatgaagaaaacaaaacttgtacctgggacttcttccacacttgttcaagatgggaatattttaaatcaacagcaactaaatgttct |
34726181 |
T |
|
| Q |
530 |
tgatgaaagtcagctggtgtacattttaaaggaaatccatgccaacaaagcaatataagatctttcgaaagatatttgtaatctccattaagttgtacac |
629 |
Q |
| |
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|||||||| || |||||||| | ||||||||||||||||||||||||||| || || |||| | |||||||||||||||| ||| | ||||||||| | |
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| T |
34726182 |
tgatgaaactcttctggtgtatactttaaaggaaatccatgccaacaaagccatcgaatatctctggaaagatatttgtaatttccttcaagttgtacgc |
34726281 |
T |
|
| Q |
630 |
cag |
632 |
Q |
| |
|
||| |
|
|
| T |
34726282 |
cag |
34726284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 376 - 566
Target Start/End: Original strand, 34716306 - 34716496
Alignment:
| Q |
376 |
tgaaccattgaagtgaactcctgtttattacttctaagagaaaaattaattagtatcgaaacaagatcaagaagaaaactaaacttgtacctgggacttc |
475 |
Q |
| |
|
||||||| |||| |||||||| |||||||| ||| || || || |||||||||||||||||| |||||| ||||||||||||||||||| | |||||| |
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|
| T |
34716306 |
tgaaccactgaactgaactccagtttattaattccaaaaggaagattaattagtatcgaaacgagatcataaagaaaactaaacttgtacttaggacttt |
34716405 |
T |
|
| Q |
476 |
ctccacactcgttccagattggaatattttaagtcaacagccacaatacattcttgatgaaagtcagctggtgtacattttaaaggaaatc |
566 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| || | | |||||||| |||||| |||||||||||||||||||| |||| |
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|
| T |
34716406 |
ttccacactcgttccagattggaatattttaaatcaacagcaactaaatgttcttgataaaagtctgctggtgtacattttaaagggaatc |
34716496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 34724969 - 34725076
Alignment:
| Q |
26 |
tagatagaaacaaatagaattgttaagagcaattattaaaagatgactattagcctttcctcctaacaaatatgaacctctcttcatcatattgaagttt |
125 |
Q |
| |
|
|||||||||| ||| |||||| | |||||||||||||||| | |||||||||||||||| ||| |||||| | |||||||||| ||||||||||||||| |
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| T |
34724969 |
tagatagaaataaagagaattaatgagagcaattattaaaaaacgactattagcctttcc-cctgacaaatgttaacctctctt-atcatattgaagttt |
34725066 |
T |
|
| Q |
126 |
tagcaaaaat |
135 |
Q |
| |
|
|||| |||| |
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| T |
34725067 |
aagcataaat |
34725076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 463 - 626
Target Start/End: Original strand, 7887258 - 7887421
Alignment:
| Q |
463 |
tacctgggacttcctccacactcgttccagattggaatattttaagtcaacagccacaatacattcttgatgaaagtcagctggtgtacattttaaagga |
562 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| || | | |||||||||||||| || ||| || |||||||||| |
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|
| T |
7887258 |
tacctgagactttctccacactcgttccagattggaatatttcaagacaacagcaactagagtatcttgatgaaagtcggcaggtatatattttaaaggg |
7887357 |
T |
|
| Q |
563 |
aatccatgccaacaaagcaatataagatctttcgaaagatatttgtaatctccattaagttgta |
626 |
Q |
| |
|
||||||||||||| |||| | |||||| | | ||||||||||||||||||||||||||||||| |
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|
| T |
7887358 |
aatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatctccattaagttgta |
7887421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 637
Target Start/End: Complemental strand, 4344210 - 4344169
Alignment:
| Q |
596 |
gaaagatatttgtaatctccattaagttgtacaccagaaagt |
637 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
4344210 |
gaaagatatttaaaatctccatcaagttgtacaccagaaagt |
4344169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 637
Target Start/End: Complemental strand, 4352489 - 4352448
Alignment:
| Q |
596 |
gaaagatatttgtaatctccattaagttgtacaccagaaagt |
637 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
4352489 |
gaaagatatttaaaatctccatcaagttgtacaccagaaagt |
4352448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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