View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13844_low_3 (Length: 411)
Name: NF13844_low_3
Description: NF13844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13844_low_3 |
 | |
|
| [»] scaffold0164 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 43558244 - 43558058
Alignment:
| Q |
11 |
cagagagactcaaactagtccaagctgatttaatggaagaaaatagcttcgacaatgcgatcatgggatgcaaaggtgtctttcacattgcctctccagt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43558244 |
cagaaagactcaaactagtccaagctgatttaatggaagaaaatagcttcgacaatgcgatcatgggatgcaaaggtgtctttcacattgcctctccagt |
43558145 |
T |
|
| Q |
111 |
actcaatcatatatcaaatgatcctaaggtttgatatttcatttatatta----attattcataggtatctctatgtcacaacctat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
43558144 |
actcaatcatatatcaaatgatcctaaggtttgatatttcatttatattaattaattattcatagatatctctatgtcacaacctat |
43558058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 259 - 393
Target Start/End: Complemental strand, 43558045 - 43557911
Alignment:
| Q |
259 |
ataatctcaaacaacaggcagaaatcttggaaccagcggtccaaggtacgctgaatgttttgcgttcttgtcaaaagaatccagcccttgttcgagtggt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43558045 |
ataatctcaaacaacaggcagaaatcttggaaccagcagtccaaggtacgctgaatgttttgcgttcttgtcgaaagaatccagcccttgttcgagtggt |
43557946 |
T |
|
| Q |
359 |
gttagcctcatcgtcttcagctgttagagtaagag |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43557945 |
gttagcctcatcgtcttcagctgttagagtaagag |
43557911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 23694 - 23458
Alignment:
| Q |
11 |
cagagagactcaaactagtccaagctgatttaatggaagaaaatagcttcgacaatgcgatcatgggatgcaaaggtgtctttcacattgcctctccagt |
110 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23694 |
cagaaagactcgaactagtccaagctgatttaatggaacaaaatagcttcgacaaagcgatcatgggatgcaaagctgtctttcacattgcctctccagt |
23595 |
T |
|
| Q |
111 |
actcaatcatatatcaaatgatcctaaggtttgatatttcatttatattaattattcataggtatctctatgtcacaacctataagcttgcttatacatt |
210 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
23594 |
acccaatcatatatcaaatggtcctaaggtgtgatatttcatttatatta----ttcataggtatctctatgtcacaacctataagctc----atgcatt |
23503 |
T |
|
| Q |
211 |
aatcaaaatcttcacatcatggagactatacacatagtgaaataagt |
257 |
Q |
| |
|
||| |||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
23502 |
aattaaaatcctcacatcatggagactat--acatagtgaaataagt |
23458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 23407 - 23286
Alignment:
| Q |
272 |
acaggcagaaatcttggaaccagcggtccaaggtacgctgaatgttttgcgttcttgtcaaaagaatccagcccttgttcgagtggtgttagcctcatcg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| | || |
|
|
| T |
23407 |
acaggcagaaatcttggaaccagcggtccaaggtacgctaaatgtgttgcgttcttgtcgaaagaatccagcccttgttcgagttgtgttagccgcgtca |
23308 |
T |
|
| Q |
372 |
tcttcagctgttagagtaagag |
393 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23307 |
tcttcagctgttagagtaagag |
23286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 393
Target Start/End: Original strand, 36517059 - 36517126
Alignment:
| Q |
326 |
ttgtcaaaagaatccagcccttgttcgagtggtgttagcctcatcgtcttcagctgttagagtaagag |
393 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
36517059 |
ttgttaaaagaatccagcccttgttcgagttgtgttagcctcgtcatcttcatctgttagagtaagag |
36517126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University