View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13844_low_4 (Length: 379)
Name: NF13844_low_4
Description: NF13844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13844_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 9086521 - 9086216
Alignment:
| Q |
10 |
atgaataatagtggtagattctattccaactatggtgactaaaatgaaaaatgctaaacttacctaagccttcatttgtagaaatcaaagatgcagtttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086521 |
atgaataatagtggtagattctattccaactatggtgactaaaatgaaaaatgctaaacttacctaagccttcatttgtagaaatcaaagatgcagtttt |
9086422 |
T |
|
| Q |
110 |
ttctttaaagcagaagagtgatatcggtctttatatatggatttggtgccactttttcatcataattttgaagatattattggaaatgacgtgtataatg |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9086421 |
ttctttaaagcagaagagtgatattggtctttatatatggatttggtggcactttttcatcataattttgaagatattattggaaatgatgtgtataatg |
9086322 |
T |
|
| Q |
210 |
caactaaggaaagcttggattcttcctaatcttaattctaatttagtagttttaattcctaaattttctggaaccattgccttggcaaacttccaataca |
309 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086321 |
caactaaggaaaggttggattcttcctaatcttaattctaatttagtagttttaattcctaaattttctggaaccattgccttggcaaacttccaataca |
9086222 |
T |
|
| Q |
310 |
aaataa |
315 |
Q |
| |
|
|||||| |
|
|
| T |
9086221 |
aaataa |
9086216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University