View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13844_low_7 (Length: 258)
Name: NF13844_low_7
Description: NF13844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13844_low_7 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31265271 - 31265511
Alignment:
| Q |
1 |
tgcaaatagaaagtttatatcctaacattgaaggtatcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31265271 |
tgcaaatagaaagtttatatcctatcattggaggtatcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccc |
31265370 |
T |
|
| Q |
101 |
caccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31265371 |
caccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgt |
31265470 |
T |
|
| Q |
201 |
gttatcatccatcaattttgatgttcaaccaaatatgtttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31265471 |
gttatcatccatcaattttgatgttcaaccaaatatgtttg |
31265511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 22045549 - 22045389
Alignment:
| Q |
36 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga |
135 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| | | |||||| | |||||||||| | | | ||| |
|
|
| T |
22045549 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtga |
22045450 |
T |
|
| Q |
136 |
acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaat |
196 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| |
|
|
| T |
22045449 |
gcactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaat |
22045389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 22357555 - 22357670
Alignment:
| Q |
69 |
tcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatca |
168 |
Q |
| |
|
|||||| |||||||||| | ||||||||||| | | |||| | | ||||||||| | | |||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
22357555 |
tcctacctgttttgacccacttcctacttccacgctactttgcatcaaaatattttccctaccatgaacactatttgcttttaatatcctcatatcatcc |
22357654 |
T |
|
| Q |
169 |
tcaaggactgataccc |
184 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
22357655 |
tcaaggattgaaaccc |
22357670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 44355936 - 44355776
Alignment:
| Q |
36 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga |
135 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| | | |||||| | |||||||||| | | | ||| |
|
|
| T |
44355936 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtga |
44355837 |
T |
|
| Q |
136 |
acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaat |
196 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| |
|
|
| T |
44355836 |
gcactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaat |
44355776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 84179 - 84320
Alignment:
| Q |
36 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga |
135 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| | | |||||| | |||||||||| || | | ||| |
|
|
| T |
84179 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccttaccgtga |
84278 |
T |
|
| Q |
136 |
acactattttctttca--atgtcctcatatcatcatcaagga |
175 |
Q |
| |
|
||||||||| |||| | || ||||||||||||| ||||||| |
|
|
| T |
84279 |
acactatttgcttttaatatctcctcatatcatcctcaagga |
84320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 2501625 - 2501486
Alignment:
| Q |
36 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaac-atg |
134 |
Q |
| |
|
||||||| | ||||| ||||||||||||||| |||||| |||||||||| | ||||||||||| | | |||||| | |||||| ||||||| || || |
|
|
| T |
2501625 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatagaaata-ttttctctactgtg |
2501527 |
T |
|
| Q |
135 |
aacactattttctttcaatgtcctcatatcatcatcaagga |
175 |
Q |
| |
|
|||||||||| ||| ||| ||||||||||||| ||||||| |
|
|
| T |
2501526 |
aacactatttgattttaatatcctcatatcatcctcaagga |
2501486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 2501926 - 2502053
Alignment:
| Q |
47 |
catccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttc |
146 |
Q |
| |
|
|||| ||||||||||||||| ||| || |||||||||| | ||||||||||| | | |||||| | |||||||||| | | | |||||||||||| | |
|
|
| T |
2501926 |
catcaatcttaccacacttaactcc-acctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgc |
2502024 |
T |
|
| Q |
147 |
tttcaatgtcctcatatcatcatcaagga |
175 |
Q |
| |
|
||| ||| || |||||||||| ||||||| |
|
|
| T |
2502025 |
tttaaatatcatcatatcatcctcaagga |
2502053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 31395865 - 31395929
Alignment:
| Q |
111 |
ttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaagga |
175 |
Q |
| |
|
|||||||||||||| | | | ||||||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
31395865 |
ttttgaaatattttccctaccgtgaacactattttcttttaatatcctcatatcatcctcaagga |
31395929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 241
Target Start/End: Original strand, 12780713 - 12780919
Alignment:
| Q |
36 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga |
135 |
Q |
| |
|
||||||||| |||| ||||| |||| ||| |||||||| |||||| | | ||||||||||||||||||||||||| |||||||||| | | | | |
|
|
| T |
12780713 |
atcattaaccgcatttttcttaacacatctatctcctacatattttgaaccacttcctacttccccaccacttggtttcgaaatattttccctactttca |
12780812 |
T |
|
| Q |
136 |
acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaat |
234 |
Q |
| |
|
||| | ||| |||| ||||||||||||||||| ||||| ||| |||| || ||| |||| ||| ||| ||||||| |||||||||||| |||||| |
|
|
| T |
12780813 |
acattgtttgcttttaatgtcctcatatcatcctcaagtgttgaaacccgattaagaaaatccttgtgttcacccatcaacttttgatgttcagccaaat |
12780912 |
T |
|
| Q |
235 |
atgtttg |
241 |
Q |
| |
|
| ||||| |
|
|
| T |
12780913 |
aagtttg |
12780919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University