View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13845_high_2 (Length: 386)
Name: NF13845_high_2
Description: NF13845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13845_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 344
Target Start/End: Original strand, 1717455 - 1717784
Alignment:
| Q |
15 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttat |
114 |
Q |
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| T |
1717455 |
gacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaagctatctagattgacacctagtggctcat |
1717554 |
T |
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| Q |
115 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattgg |
214 |
Q |
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| T |
1717555 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagtttcgagtaggtaattcatttgg |
1717654 |
T |
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| Q |
215 |
ttaacaaagttttaaataaggagagtgaatcttagagaaagttctagtaagagtgttcctagcattctgtctaaggaggaatgccatgtacactctctaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
1717655 |
ttaacaaagttttaaataaggagagtgaatcttagagaaagtgccagtaagagtgttcctagcattctgtctaaggagaaatgctatgtacattctctaa |
1717754 |
T |
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| Q |
315 |
catctactctcttatttagtgaaattcatg |
344 |
Q |
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| T |
1717755 |
cgtccactttcttatttagtgaaattcatg |
1717784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 1738952 - 1739164
Alignment:
| Q |
15 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttat |
114 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| |||||||||| ||||||| || |
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| T |
1738952 |
gacatgatcacataagtatttgggatgtatttcctcacaacatcataagctaacttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
1739051 |
T |
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| Q |
115 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtataaagaaatcagcttcgagtaggtaattcaattgg |
214 |
Q |
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||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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| T |
1739052 |
tcatcagctctattcctcctaaactttttctattattatatctgtaaacaagttcaattcatgtataaagatatcagtttcgagtaggtaattcatttgg |
1739151 |
T |
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| Q |
215 |
ttaacaaagtttt |
227 |
Q |
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| T |
1739152 |
tgaactaagtttt |
1739164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 1754123 - 1754300
Alignment:
| Q |
15 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttat |
114 |
Q |
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||||| |||||||||| |||||| ||||||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||||||||| |||||| || |
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| T |
1754123 |
gacattatcacataagcatttggattgtatttcctcactgcatcataagcctccttgtaatatttcttgaggctatctagattgacaccttgtggctcat |
1754222 |
T |
|
| Q |
115 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaattcatgtat-aaagaaatcag |
191 |
Q |
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| T |
1754223 |
tcatcaactctattcctcctaaacttggtctattaccatacctgtccacaaattcaattcaagtatcaaagaaatcag |
1754300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 1748807 - 1748932
Alignment:
| Q |
15 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaggctatctagattgacacctagtggcttat |
114 |
Q |
| |
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||||| |||||||||| | |||| ||||||| |||||| ||||||||||| || ||||||| ||||| || ||||| |||||||||||| |||||| || |
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| T |
1748807 |
gacatgatcacataagcctctgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcat |
1748906 |
T |
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| Q |
115 |
tcatcagctctattcctcctaaactt |
140 |
Q |
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| T |
1748907 |
tcatcagctctattcctcctaaactt |
1748932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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