View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13845_low_1 (Length: 470)

Name: NF13845_low_1
Description: NF13845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13845_low_1
NF13845_low_1
[»] chr1 (2 HSPs)
chr1 (4-337)||(29494874-29495205)
chr1 (404-468)||(29494742-29494805)
[»] chr7 (4 HSPs)
chr7 (1-337)||(6607944-6608280)
chr7 (1-337)||(6625837-6626156)
chr7 (404-468)||(6626648-6626712)
chr7 (404-468)||(6607509-6607568)
[»] chr6 (2 HSPs)
chr6 (1-315)||(19843237-19843551)
chr6 (404-459)||(19843093-19843148)
[»] chr3 (1 HSPs)
chr3 (33-315)||(9793564-9793838)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 29495205 - 29494874
Alignment:
Q  4 ccgcaagaatagtcaatatacacatatataaattaccagattgaacaaccaaatcaaacaaaagggagatgaatgaatatacctgagttgagcaacgtcg 103  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29495205 ccgcaagaatagtgaatatacacagatataaattaccagattgaacaaccaaatcaaacaaaagggagatgaatgaatatacctgagttgagcaacgtcg 29495106  T
Q  104 acgagagagagcacacagagtgtcggcaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggat 203  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29495105 acgagagagagcacagagagtgtcggcgagcgtgctacggttgaaagaaaaccggcgacgagagagagcacaaatagataataatggagacacaatggat 29495006  T
Q  204 ttcaatctgcgacgggtgaaaggggagaatcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcat 303  Q
    ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||    
T  29495005 ttcaatcagcgacgggtgaaaggggagagtcgaagatcgacggcggcgacggtgaaatctcgc--gaggtgctagagttgggagaaaagggaaatggcat 29494908  T
Q  304 gggagagagagatgagaccaatcctctgctacag 337  Q
    ||||||| |||||| ||| |||||||||||||||    
T  29494907 gggagagggagatgggacgaatcctctgctacag 29494874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 404 - 468
Target Start/End: Complemental strand, 29494805 - 29494742
Alignment:
Q  404 attaaatgtgccacacaagaggggtgtatgagtggtatgccacctatggtggtatgggtatcagt 468  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29494805 attaaatgtgccacacaagaggg-tgtatgagtggtatgccacctatggtggtatgggtatcagt 29494742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 6608280 - 6607944
Alignment:
Q  1 ataccgcaagaatagtcaatatacacatatataaattaccagattgaacaaccaaatcaaacaaaagggagatgaatgaatatacctgagttgagcaacg 100  Q
    |||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  6608280 ataccgcaagaatagtgaatatacacagatataaattaccagtttgaacaaccaaatcaaacaaaagggagatgaatgaatatacctgagttgaaaaacg 6608181  T
Q  101 tcgacgagagagagcac--acagagtgtcggcaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaa 198  Q
     ||||||||||||||||  | |||| |||||| || ||||||| ||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||    
T  6608180 ccgacgagagagagcacagagagagcgtcggcgagggtgctacagttaaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaa 6608081  T
Q  199 tggatttcaatctgcgacgggtgaaaggggagaatcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaat 298  Q
    || ||||||||| |||| ||||||||||||||||||||| |||||||  |||||||| |||||||  || ||||||||||||||||||||||||||||||    
T  6608080 tgaatttcaatcagcgatgggtgaaaggggagaatcgaatatcgacgacggcgacggcgaaatct--cgtgaggtgctagggttgggagaaaagggaaat 6607983  T
Q  299 cgcatgggagagagagatgagaccaatcctctgctacag 337  Q
     ||||| |||||||||||| | |||||||||| ||||||    
T  6607982 ggcatgagagagagagatgggcccaatcctctactacag 6607944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 6625837 - 6626156
Alignment:
Q  1 ataccgcaagaatagtcaatatacacatatataaattaccagattgaacaaccaaatcaaacaaaagggagatgaatgaatatacctgagttgagcaacg 100  Q
    |||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  6625837 ataccgcaagaatagtgaatatacacagatataaattaccagtttgaacaaccaaatcaaacaaaagggagatgaatgaatatacctgagttgaaaaacg 6625936  T
Q  101 tcgacgagagagagcacacagagtgtcggcaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatg 200  Q
     ||||||||||||||         |||||| || ||||||| ||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||    
T  6625937 ccgacgagagagagc---------gtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatg 6626027  T
Q  201 gatttcaatctgcgacgggtgaaaggggagaatcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcg 300  Q
     ||||||||| |||| ||||||||||||||||||||| |||||      |||||| |||||||  || |||||||||||||||||||||||||||||| |    
T  6626028 aatttcaatcagcgatgggtgaaaggggagaatcgaatatcga------cgacggcgaaatct--cgtgaggtgctagggttgggagaaaagggaaatgg 6626119  T
Q  301 catgggagagagagatgagaccaatcctctgctacag 337  Q
    ||||||||||||||||| | |||||||||| ||||||    
T  6626120 catgggagagagagatgggcccaatcctctactacag 6626156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 6626648 - 6626712
Alignment:
Q  404 attaaatgtgccacacaagaggggtgtatgagtggtatgccacctatggtggtatgggtatcagt 468  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||| | |||| ||||||||    
T  6626648 attaaatgtgctacacaagaggggtgtatgagtggtatgccagctatggagatatgtgtatcagt 6626712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 468
Target Start/End: Complemental strand, 6607568 - 6607509
Alignment:
Q  404 attaaatgtgccacacaagaggggtgtatgagtggtatgccacctatggtggtatgggtatcagt 468  Q
    ||||||||||| |||||||||||||||||     |||||||| |||||| |||||| ||||||||    
T  6607568 attaaatgtgctacacaagaggggtgtat-----gtatgccagctatggaggtatgtgtatcagt 6607509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 19843551 - 19843237
Alignment:
Q  1 ataccgcaagaatagtcaatatacacatatataaattaccagattgaacaaccaaatcaaacaaaagggagatgaatgaatatacctgagttgagcaacg 100  Q
    |||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  19843551 ataccgcaagaatagtgaatatacacagatataaattaccagtttgaacaaccaaatcaaacaaaagggagatgaatgaatatacctgagttgaaaaacg 19843452  T
Q  101 tcgacgagagagagcac--acagagtgtcggcaagcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaa 198  Q
     ||||||||||| ||||  | |||| |||||| || ||||||| ||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||    
T  19843451 ccgacgagagagggcacagagagagcgtcggcgagggtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaa 19843352  T
Q  199 tggatttcaatctgcgacgggtgaaaggggagaatcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaat 298  Q
    || ||||||||| ||| |||||||||||||||||||||||||| |||  || |||||||||||||  || ||||||||||||||||||||||||||||||    
T  19843351 tgaatttcaatcagcggcgggtgaaaggggagaatcgaagatcaacgacggtgacggtgaaatct--cgtgaggtgctagggttgggagaaaagggaaat 19843254  T
Q  299 cgcatgggagagagaga 315  Q
     ||||||||||||||||    
T  19843253 ggcatgggagagagaga 19843237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 404 - 459
Target Start/End: Complemental strand, 19843148 - 19843093
Alignment:
Q  404 attaaatgtgccacacaagaggggtgtatgagtggtatgccacctatggtggtatg 459  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  19843148 attaaatgtgccacacaagaggggtgtatgagtggtatgccagctatggaggtatg 19843093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 33 - 315
Target Start/End: Original strand, 9793564 - 9793838
Alignment:
Q  33 aaattaccagattgaacaaccaaatcaaacaaaagggagatgaatgaatatacctgagttgagcaacgtcgacgagagagagcacacagagtgtcggcaa 132  Q
    |||||||||||||||| ||||||||||||| | |||||||||| ||| ||||| ||||||||  |||| ||| ||||||||| ||| |||| | | || |    
T  9793564 aaattaccagattgaataaccaaatcaaacgagagggagatgagtgagtatacttgagttgaagaacgccgatgagagagagtacaaagagcgccagcga 9793663  T
Q  133 gcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacgggtgaaaggggagaa 232  Q
    | |||||||||||||||||||||||  | || |||||||||||||   | |||||||||||| | ||||||||||||| ||||| ||||||||||||| |    
T  9793664 gggtgctacggttgaaagaaaaccgctggcgagagagagcacaaaggaagaataatggagacgcgatggatttcaatcagcgacaggtgaaaggggagga 9793763  T
Q  233 tcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagaga 315  Q
    |||| ||||||       ||| ||||||||| ||   |||||||||||||||||| |||||||||  ||||||| ||||||||    
T  9793764 tcgatgatcga------agacagtgaaatcttgc--aaggtgctagggttgggaggaaagggaaagggcatgggggagagaga 9793838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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