View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13845_low_3 (Length: 385)
Name: NF13845_low_3
Description: NF13845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13845_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 5025007 - 5024843
Alignment:
| Q |
45 |
tctcaagagagcgtcggttaagtataaaccataatcccttgtcatctcttgcaatctgattacgtagtaaggagaggaactatttcactgctaatgtttg |
144 |
Q |
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| T |
5025007 |
tctcaagagagcgtcggtgaagtataaaccatactcccttgtcttctcttgcaatctgatgaagtagtaaggagaggaaatatttcactgctaatgtttg |
5024908 |
T |
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| Q |
145 |
cttttgagttctttttcatgttcaaatgtcttgttttattgttttgtcctgttaaatctcaatta |
209 |
Q |
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| T |
5024907 |
cttttgagttctttttcatattcaaatgtcttgttttattgttttgtcctgttaaatctcaatta |
5024843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 5024759 - 5024681
Alignment:
| Q |
292 |
atgatattattagtagttcaaaagtttgttagtatatatagaagttctattttccaaagcatatctagtttgaagatgt |
370 |
Q |
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| T |
5024759 |
atgatattattagtagttcaaaagtttgttcgtatctatagaagttctattttccaaagcatatctagtttgaagatgt |
5024681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5025067 - 5025025
Alignment:
| Q |
1 |
tatatataagtaacacttcattcatcctttgaaacactgcctt |
43 |
Q |
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| T |
5025067 |
tatatataagtaacacttaattcatcctttgaaacactgcctt |
5025025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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