View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13845_low_4 (Length: 276)
Name: NF13845_low_4
Description: NF13845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13845_low_4 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 29488128 - 29488376
Alignment:
| Q |
12 |
aatatgaaaatgactaactttataaatatctagcactagccagttctcactcgacaacttgggattttttacaatcatggcaaacgaggtaattctgtta |
111 |
Q |
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| T |
29488128 |
aatatgaaaacgacccacttcataaataactagcactagccagttctcactcggcaacttaggattttttacaatcatggcaaacgaggtaattctgtta |
29488227 |
T |
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| Q |
112 |
gatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtc |
211 |
Q |
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| T |
29488228 |
gatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatctcagaaataagagtc |
29488327 |
T |
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| Q |
212 |
ctttacttcttcaaatgaatccaattcataagaagattccagttcttat |
260 |
Q |
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| T |
29488328 |
ctttacttcttcaaatgaacccaattcacaacaagattccagttcttat |
29488376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 30256917 - 30256696
Alignment:
| Q |
41 |
ctagcactagccagttctcactcgacaacttgggattt---tttacaatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtat |
137 |
Q |
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| T |
30256917 |
ctagcactagtcagttctcactcgactacttaggatttgtttttacaatcatggcaaacgaggtaattctgtcagatacatgggctagcgtgtttggtat |
30256818 |
T |
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| Q |
138 |
gagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaatt |
237 |
Q |
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| T |
30256817 |
gagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttc-aatgaatccaatt |
30256719 |
T |
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| Q |
238 |
cataagaagattccagttcttat |
260 |
Q |
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| T |
30256718 |
cacaagaagattccagttcttat |
30256696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 81 - 261
Target Start/End: Original strand, 29490294 - 29490474
Alignment:
| Q |
81 |
tacaatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgag |
180 |
Q |
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| T |
29490294 |
tacaatcatggcaaacgaggtagttttgttggatacatgggttagcatgtttggtatgagggttagaattgcattagctgaaaagggagttcaatatgag |
29490393 |
T |
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| Q |
181 |
tacaaagaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaattcataagaagattccagttcttatt |
261 |
Q |
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| T |
29490394 |
tacaaagaagaaaatcttagagataaaagtcctatacttcttcagatgaatccaattcataagaaaattccagttcttatt |
29490474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 29502400 - 29502574
Alignment:
| Q |
86 |
tcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaa |
185 |
Q |
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| T |
29502400 |
tcatggcaaacgaagtggttctgttggatacatggtttagcatgtttgggatgagagttaagattgcattagctgaaaaaagtgttaaatacgagtgtaa |
29502499 |
T |
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| Q |
186 |
agaagaagatcttagaaataagagtcctttacttcttcaaatgaatccaattcataagaagattccagttcttat |
260 |
Q |
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| T |
29502500 |
agaagaaaatctcagaaataagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttat |
29502574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 29505581 - 29505529
Alignment:
| Q |
205 |
aagagtcctttacttcttcaaatgaatccaattcataagaagattccagttct |
257 |
Q |
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| T |
29505581 |
aagagtcctttactcctacaaatgaatccaattcacaagaaaattccagttct |
29505529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 9357 - 9224
Alignment:
| Q |
127 |
atgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaaa |
226 |
Q |
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| T |
9357 |
atgtttggtatgagagcaaggatagcattggctgaaaaaggcataaagtatgagtacaaggaagaagatcttgaaaacaagagccaaatgcttttgaaaa |
9258 |
T |
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| Q |
227 |
tgaatccaattcataagaagattccagttcttat |
260 |
Q |
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| T |
9257 |
tgaacccaattcacaagaagattcctgttcttat |
9224 |
T |
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