View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13845_low_7 (Length: 245)
Name: NF13845_low_7
Description: NF13845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13845_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1717444 - 1717210
Alignment:
| Q |
1 |
gccacagattctaaagttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaatatgtattcggataaatttaaggaaa |
100 |
Q |
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| T |
1717444 |
gccacagattctaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaatttgtattcggacaaattcaatggca |
1717345 |
T |
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| Q |
101 |
tgagtgttcaacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaaaacca |
200 |
Q |
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| T |
1717344 |
tgaatgttcaacaaaatattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaatacca |
1717245 |
T |
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| Q |
201 |
aatccttgccaataatagttaactttattgataat |
235 |
Q |
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| T |
1717244 |
aatccttgccaataatagttaactttattgataat |
1717210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1738941 - 1738727
Alignment:
| Q |
1 |
gccacagattctaaagttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaatatgtattcggataaatttaaggaaa |
100 |
Q |
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| T |
1738941 |
gccacagattccaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaatatgttttgggacaaattcaatggca |
1738842 |
T |
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| Q |
101 |
tgagtgttcaacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaa--aac |
198 |
Q |
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| T |
1738841 |
tgaatgttcaacaaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataac |
1738742 |
T |
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| Q |
199 |
caaatccttgccaat |
213 |
Q |
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| T |
1738741 |
caaatccttgccaat |
1738727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 1748791 - 1748591
Alignment:
| Q |
6 |
agattctaaagttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaatatgtattcggataaatttaaggaaatgagt |
105 |
Q |
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| T |
1748791 |
agattctaaagctcttctctcatttgttagtggcttcaacaaagtagtccttgatgtgcattactacaatatgttttgggaaaaattcaatggcatgaat |
1748692 |
T |
|
| Q |
106 |
gttcaacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaaaaccaaatcc |
205 |
Q |
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| T |
1748691 |
gttcaacaaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcc |
1748592 |
T |
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| Q |
206 |
t |
206 |
Q |
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| T |
1748591 |
t |
1748591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 1754108 - 1753919
Alignment:
| Q |
5 |
cagattctaaagttcttctctcatttgtcaaaggctttgataaagtagtccttgatgtgcattactacaatatgtattcggataaatttaaggaaatgag |
104 |
Q |
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||||||||||||| |||||||||||||||| || || | ||||| |||||||||||||||||||||||| | |||||||| ||||| | | |||| |
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| T |
1754108 |
cagattctaaagtacttctctcatttgtcactggattcaacaaagttgtccttgatgtgcattactacaatctttattcggacaaattcactaacatgaa |
1754009 |
T |
|
| Q |
105 |
tgttcaacaaaatattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaa |
194 |
Q |
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| T |
1754008 |
tgttcaacaaaatattgactacataaacaacgaaagagcctcagatcttagcggcgtctcttcaacaaacgctcttagttttgtaggtaa |
1753919 |
T |
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