View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13846_high_12 (Length: 213)
Name: NF13846_high_12
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13846_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 43311150 - 43310968
Alignment:
| Q |
16 |
aagaagcatttcagttttacatcttctcagtgctaaaagagttcaatctcttcgtactgtgagagaggaagaaattggtttaatgatggagaaaataaac |
115 |
Q |
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| T |
43311150 |
aagaagcatttcagttttacatcttctcagtgctaaaagagttcaatctcttagcactgtgagagaggaagaaattggtttaatgatggagaaaataaac |
43311051 |
T |
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| Q |
116 |
cattgttgttcaacatctttacaggtgaatataagtgatttactctccacaactattaatgatatagtttgtagggttgcttt |
198 |
Q |
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| T |
43311050 |
cattgttgttccacatctttacccgtgaatataagtgatttactctccacaactatcaatgatatagtttgtagggttgcttt |
43310968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 43275439 - 43275267
Alignment:
| Q |
26 |
tcagttttacatcttctcagtgctaaaagagttcaatctcttcgtactgtgagagaggaagaaattggtttaatgatggagaaaataaaccattgttgtt |
125 |
Q |
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| T |
43275439 |
tcagttttacatcttctcagtgctaaaagagttcaatctcttcgtgccgtgagagaggaagaagtaggtttaatgatggagaaaataaagcactattctt |
43275340 |
T |
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| Q |
126 |
caacatctttacaggtgaatataagtgatttactctccacaactattaatgatatagtttgtagggttgcttt |
198 |
Q |
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| T |
43275339 |
ctaaatcattacctgtgaatataagtgaattagcctccaaaattactaatgatatagtttgtagggttgcttt |
43275267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 194
Target Start/End: Complemental strand, 43268546 - 43268381
Alignment:
| Q |
32 |
ttacatcttctcagtgctaaaagagttcaatctcttcgtactgtgagagaggaagaaattggtttaatgatggagaaaataaacca---ttgttgttcaa |
128 |
Q |
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| T |
43268546 |
ttacatcttcttagtgctaaaagcgttcgttcttttcgcgctgtaagagaggaagaaacgggtttaatgatggagaaaataaagcactgttcttcttcca |
43268447 |
T |
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| Q |
129 |
catctttacaggtgaatataagtgatttactctccacaactattaatgatatagtttgtagggttg |
194 |
Q |
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| T |
43268446 |
cttcattaccagcgaatttaagtgaattaatggcaacaactacgaatgatatagtttgtagggttg |
43268381 |
T |
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