View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13846_high_7 (Length: 397)
Name: NF13846_high_7
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13846_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 187 - 384
Target Start/End: Complemental strand, 36630269 - 36630074
Alignment:
| Q |
187 |
agacttatagtcatagccaacgaaagagaagtgcaacacctaaaataccataataagatgtatcacataagatatagatatatatgttgtgagaacaaat |
286 |
Q |
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| T |
36630269 |
agacttatagtcatagccaacgaaagagaagtgcaacacataaaataccataataagatgtatcacataagata--gatatatatgttgtgagaacaaat |
36630172 |
T |
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| Q |
287 |
aaagaaaacataccatagaaggaaggtcttgtaatgatatcattgacaatctcatatgcatttgccgacaaagccttcaattgtggtaactccttatt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36630171 |
aaagaaaacataccatagaaggaaggtcttgtaatgatatcattgacaatctcatatgcatttgccgacaaagccttcaattgtggtaactccttatt |
36630074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 193 - 384
Target Start/End: Complemental strand, 36566774 - 36566578
Alignment:
| Q |
193 |
atagtcatagccaacgaaagagaagtgcaacacctaaaataccataataagatgtat------cacata-agatatagatatatatgttgtgagaacaaa |
285 |
Q |
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|||||||||||||| |||||||||||||| || ||| |||||||||||||||||| |||| | | |||| ||||||||||||||||||||||| |
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| T |
36566774 |
atagtcatagccaa-gaaagagaagtgcagcatataacataccataataagatgtagaatgagcacaaacacatat-gatatatatgttgtgagaacaaa |
36566677 |
T |
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| Q |
286 |
taaagaaaacataccatagaaggaaggtcttgtaatgatatcattgacaatctcatatgcatttgccgacaaagccttcaattgtggtaactccttatt |
384 |
Q |
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| T |
36566676 |
taaagaaaacataccatagaaggaaggtcttgtaatgatatcattgacaatctcatatgcatttgccgacaaagccttcaattgtggtaactccttatt |
36566578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 36577578 - 36577475
Alignment:
| Q |
281 |
acaaataaagaaaacataccatagaaggaaggtcttgtaatgatatcattgacaatctcatatgcatttgccgacaaagccttcaattgtggtaactcct |
380 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||||| |||||||||||||| | ||||| |
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| T |
36577578 |
acaaataaagaaagcataccatagaaggaaggtcttgtaatgatatcattgaaaaggtcatatacatttgctgacaaggccttcaattgtggaagctcct |
36577479 |
T |
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| Q |
381 |
tatt |
384 |
Q |
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|||| |
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| T |
36577478 |
tatt |
36577475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 36630436 - 36630320
Alignment:
| Q |
16 |
ataaaagtgaaataaccaatatacctaatatattttggataaaaatgtggtatcaacttcacttatgtagttactcaaaaccatgtgtgatgaacccatg |
115 |
Q |
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||||||||||||| ||||||||||||||| |||| |||| ||||| ||||||||||||||||||| ||||| |||||||||| ||||||| |||||| |
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| T |
36630436 |
ataaaagtgaaatgaccaatatacctaatgcatttcggatgaaaatatggtatcaacttcacttatatagttgctcaaaacca--tgtgatggccccatg |
36630339 |
T |
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| Q |
116 |
accaacaagaagaacatca |
134 |
Q |
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||||| ||||||||||||| |
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| T |
36630338 |
accaagaagaagaacatca |
36630320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 36566928 - 36566834
Alignment:
| Q |
16 |
ataaaagtgaaataaccaatatacctaatatattttggataaaaatgtggtatcaac--ttcacttatgtagttactcaaaaccatgtgtgatga |
108 |
Q |
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|||||||| ||||||||||||||||||||| |||||||| ||| ||||| ||| ||| | || ||||||||| |||||||||||||||||||| |
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| T |
36566928 |
ataaaagtaaaataaccaatatacctaatacattttggacaaagatgtgatattaacaatggacgtatgtagttgctcaaaaccatgtgtgatga |
36566834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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