View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13846_low_1 (Length: 1070)

Name: NF13846_low_1
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13846_low_1
NF13846_low_1
[»] chr4 (15 HSPs)
chr4 (651-1051)||(4750401-4750801)
chr4 (69-585)||(4741775-4742294)
chr4 (495-622)||(4750274-4750401)
chr4 (645-823)||(4743634-4743820)
chr4 (641-796)||(3675998-3676161)
chr4 (954-1043)||(4743970-4744059)
chr4 (428-483)||(4747345-4747400)
chr4 (943-1004)||(16656579-16656640)
chr4 (943-1004)||(16661152-16661213)
chr4 (821-932)||(4743868-4743979)
chr4 (227-321)||(4753231-4753325)
chr4 (863-931)||(34948687-34948755)
chr4 (20-55)||(4741086-4741121)
chr4 (20-56)||(4752933-4752969)
chr4 (943-1004)||(34948319-34948380)
[»] chr3 (3 HSPs)
chr3 (870-1004)||(33283030-33283164)
chr3 (870-1004)||(33691799-33691933)
chr3 (943-1004)||(33287632-33287693)
[»] scaffold0163 (2 HSPs)
scaffold0163 (943-1004)||(30803-30864)
scaffold0163 (873-1004)||(35375-35506)
[»] scaffold0054 (1 HSPs)
scaffold0054 (954-1004)||(24283-24333)
[»] chr2 (2 HSPs)
chr2 (956-1005)||(13116105-13116154)
chr2 (954-1004)||(28565504-28565550)
[»] chr1 (1 HSPs)
chr1 (375-439)||(4407870-4407935)


Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 651 - 1051
Target Start/End: Original strand, 4750401 - 4750801
Alignment:
Q  651 gaaggaagtcaaagagaaaaatagagtaacacctctcaattccaaagtggctctcttgagggagtcttctttcttgtaggatcccgtagctagtgccact 750  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4750401 gaaggaagtcaaagagaaaaatagagtaacacctctcaattccaaagaggctctcttgagggagtcttctttcttgtaggatcccgtagctagtgccact 4750500  T
Q  751 agttgtcagctccaaattcatgtctatatttacctgagaattattacaagaattcaagatctctatttggtaatgaattgactgtaagaatgtagttcct 850  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4750501 agttatcagctccaaattcatgtctatatttacctgagaattattacaagaattcaacatctctatttggtaatgaattgactgtaagaatgtagttcct 4750600  T
Q  851 agatttccattcatatgttttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaatataattcctagttaatgaat 950  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4750601 agatttccattcatatgttttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaatataattcctagttaatgaat 4750700  T
Q  951 ttataatgaatatttacaagtcaaacatacaatgaatatatacatattctaatattgacgaatgggaaaaatttaaagaagtagaagaaggaggaggctc 1050  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4750701 ttataatgaatattttcaagtcaaacatacaataaatatatacatattctaatattgacgaatgggaaaaatttaaagaagtagaagaaggaggaggctc 4750800  T
Q  1051 a 1051  Q
    |    
T  4750801 a 4750801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 69 - 585
Target Start/End: Original strand, 4741775 - 4742294
Alignment:
Q  69 aaggataggaaaatcaattaccaaggaatttagcatcgtgccatgattttaaaagcaaaaatggacatttcaattcacataatttcgtggcgcaaaataa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||| |||| ||| ||||  ||||||||||||||||||||| ||||||  | | ||    
T  4741775 aaggataggaaaatcaattaccaaggaatttagcatcgtgcctcaattctaaa-gcataaatcaacatttcaattcacataattttgtggcgggagagaa 4741873  T
Q  169 ttgattcatgaaacaatttgggggagtgtcaaaacaagatttgaattctgaaacaaaccgtgacacgatattgctacattgtggcacaatgttacattga 268  Q
     ||  ||||||||| |||||  |||||||||||| || |||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||    
T  4741874 gtgcatcatgaaacgatttgaaggagtgtcaaaataaaatttgaattctgaaactaatcgtgacacaatattgctacattgtggcacaatgttacattga 4741973  T
Q  269 tgcttcctgacatataagacaagtgaagtatcgcgccacgatctatgagcatcatgacactatctataaatgtatctttaggttgattcggttctgtttt 368  Q
    || ||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||| || |||||||||| |||||| ||| | |||||| |||||    
T  4741974 tgtttcctaacataaaagacaagtgaagtatcacgccacgatctatgagtatcatgacacaatttataaatgtaactttagattggtacggttcggtttt 4742073  T
Q  369 aaaactgaaccagactaagtcaaatactttttcgatttggtttggttaaatttttggtttcgtcgattttgcttaaaccacatacacccttaactagagg 468  Q
     ||| | ||| | || | ||| ||||| ||||| ||||||||  ||| ||||||| |||||||| |||||||||||||||  ||||||| |||   ||||    
T  4742074 gaaattaaactaaacaaggtctaatacgttttccatttggttcagttgaattttttgtttcgtcaattttgcttaaaccatttacacccctaataggagg 4742173  T
Q  469 agtcat-----catgaatgtcaannnnnnnnaaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgttagaatgtt 563  Q
    ||| ||     ||||||||||||        |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| | | ||||||    
T  4742174 agttatcataacatgaatgtcaa-tttttttaaagagaagcaaaaattattatcatataaaaaatgctaacattgtagccataagtgccataacaatgtt 4742272  T
Q  564 ttatttctcaaaattgtgttta 585  Q
    ||||||||||||||||||||||    
T  4742273 ttatttctcaaaattgtgttta 4742294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 495 - 622
Target Start/End: Original strand, 4750274 - 4750401
Alignment:
Q  495 aaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgttagaatgttttatttctcaaaattgtgtttaattaccaca 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  4750274 aaagagaagctataattattatcatctaaaaaatgctaacattgtagccataagtgccgtaacaatgttttatttctcaaaattgtgtttaattaccaca 4750373  T
Q  595 atacttatacctgtactcttgatagtgg 622  Q
    |||||| |||||||||||||||||||||    
T  4750374 atacttttacctgtactcttgatagtgg 4750401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 645 - 823
Target Start/End: Original strand, 4743634 - 4743820
Alignment:
Q  645 gaggaagaaggaagtcaaagagaaaaatagagtaa-cacctctcaattccaaagtggctctcttgagggagtcttctttctt--------gtaggatccc 735  Q
    ||||| ||| |||||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||  ||||        ||||||||||    
T  4743634 gaggaggaaagaagtcaa-gagaaaaatagagtaaacacctctcaatcccaaagaggctctcttgagggagtcttccctcttccaccgttgtaggatccc 4743732  T
Q  736 gtagctagtgccactagttgtcagctccaaattcatgtctatatttacctgagaattattacaagaattcaagatctctatttggtaa 823  Q
     ||||||||||||||| |||   ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  4743733 atagctagtgccactatttgctggctccaaattcatgtctatatttacttgagaattattacaagaattcaacatctctatttggtaa 4743820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 641 - 796
Target Start/End: Original strand, 3675998 - 3676161
Alignment:
Q  641 ccatgaggaagaaggaagtcaaagagaaaaatagagtaacacctctcaattccaaagtggctctcttgagggagtcttctttc--------ttgtaggat 732  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||  ||        |||||||||    
T  3675998 ccatgaggaggaaggaagtcaaagagaaaaatagagtaacacctctcaatcccaaagaggctctcttgagggagtcctccctcttccacctttgtaggat 3676097  T
Q  733 cccgtagctagtgccactagttgtcagctccaaattcatgtctatatttacctgagaattatta 796  Q
     ||||||||||||||||||| || |  ||||  ||||||||| ||||||||||  |||||||||    
T  3676098 gccgtagctagtgccactagatgccgactccggattcatgtcaatatttacctctgaattatta 3676161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 954 - 1043
Target Start/End: Original strand, 4743970 - 4744059
Alignment:
Q  954 taatgaatatttacaagtcaaacatacaatgaatatatacatattctaatattgacgaatgggaaaaatttaaagaagtagaagaaggag 1043  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||| ||||||| ||||||| |||| |||||||||| ||||||| ||||    
T  4743970 taatgaatatttataagtcaaacatataataaatatatacatattataatatttacgaatgagaaagatttaaagaattagaagagggag 4744059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 428 - 483
Target Start/End: Original strand, 4747345 - 4747400
Alignment:
Q  428 tcgtcgattttgcttaaaccacatacacccttaactagaggagtcatcatgaatgt 483  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4747345 tcgtcgattttgcttaaaccacatacacccttaactggaggagtcatcatgaatgt 4747400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 943 - 1004
Target Start/End: Original strand, 16656579 - 16656640
Alignment:
Q  943 taatgaatttataatgaatatttacaagtcaaacatacaatgaatatatacatattctaata 1004  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16656579 taatgaattgctaatgaatatttacaagtcaaacatacaatgaatatagacatattctaata 16656640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 943 - 1004
Target Start/End: Original strand, 16661152 - 16661213
Alignment:
Q  943 taatgaatttataatgaatatttacaagtcaaacatacaatgaatatatacatattctaata 1004  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16661152 taatgaattgctaatgaatatttacaagtcaaacatacaatgaatatagacatattctaata 16661213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 821 - 932
Target Start/End: Original strand, 4743868 - 4743979
Alignment:
Q  821 taatgaattgactgtaagaatgtagttcctagatttccattcatatgttttgtgaataatatacaattattgtcaatcctattttagaaattaaataatt 920  Q
    ||||||||||| || || |||||| |||   ||||||| || ||||| |||||||||||||||||| ||||||||||||||||||  |||| ||||||||    
T  4743868 taatgaattgattgcaaaaatgtaattcaatgatttcctttgatatgatttgtgaataatatacaactattgtcaatcctattttgaaaatgaaataatt 4743967  T
Q  921 actagtgaatat 932  Q
     ||| |||||||    
T  4743968 gctaatgaatat 4743979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 4753231 - 4753325
Alignment:
Q  227 cgtgacacgatattgctacattgtggcacaatgttacattgatgcttcctgacatataagacaagtgaagtatcgcgccacgatctatgagcatc 321  Q
    ||||||||||| || ||||||| |||||| || |||||||||||| || |||||  |||||||||||||| ||| ||| |||| |||||||||||    
T  4753231 cgtgacacgatttttctacattatggcacgattttacattgatgcctcgtgacacgtaagacaagtgaaggatcacgctacgacctatgagcatc 4753325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 863 - 931
Target Start/End: Complemental strand, 34948755 - 34948687
Alignment:
Q  863 atatgttttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaata 931  Q
    ||||| |||||||||| ||||||| |||||||||||||||||| |||| |||||| || ||| ||||||    
T  34948755 atatgatttgtgaatattatacaactattgtcaatcctattttggaaactaaatagttgctaatgaata 34948687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 4741086 - 4741121
Alignment:
Q  20 aagaatataagagaataatttattctttaatgcatg 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  4741086 aagaatataagagaataatttattctttaatgcatg 4741121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 4752933 - 4752969
Alignment:
Q  20 aagaatataagagaataatttattctttaatgcatgc 56  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4752933 aagaatataacagaataatttattctttaatgcatgc 4752969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 943 - 1004
Target Start/End: Complemental strand, 34948380 - 34948319
Alignment:
Q  943 taatgaatttataatgaatatttacaagtcaaacatacaatgaatatatacatattctaata 1004  Q
    |||||||||  |||||||||||||||| | || |||||||| |||||| ||||||| |||||    
T  34948380 taatgaattgttaatgaatatttacaaataaatcatacaataaatatagacatattttaata 34948319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 8e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 870 - 1004
Target Start/End: Complemental strand, 33283164 - 33283030
Alignment:
Q  870 ttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaatataattcctagttaatgaatttataatgaatatttacaa 969  Q
    ||||||||||||||||| ||||||  || ||||| |||||| ||| | ||| ||| |||||||||||| |   |||| ||||  ||||||||||||||||    
T  33283164 ttgtgaataatatacaactattgttgattctattctagaaactaattgattgctaatgaatataattcatgactaatcaattgctaatgaatatttacaa 33283065  T
Q  970 gtcaaacatacaatgaatatatacatattctaata 1004  Q
    ||||||||||||||||||||| |||||||||||||    
T  33283064 gtcaaacatacaatgaatataaacatattctaata 33283030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 870 - 1004
Target Start/End: Original strand, 33691799 - 33691933
Alignment:
Q  870 ttgtgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaatataattcctagttaatgaatttataatgaatatttacaa 969  Q
    ||||||||||||||||| ||||||  || ||||| || ||| ||| | ||| ||| | |||||||||| |   |||| ||||  ||||||||||||||||    
T  33691799 ttgtgaataatatacaactattgttgattctattctaaaaactaattgattgctaatcaatataattcatgactaatcaattgctaatgaatatttacaa 33691898  T
Q  970 gtcaaacatacaatgaatatatacatattctaata 1004  Q
    ||||||||||||||||||||| |||||||||||||    
T  33691899 gtcaaacatacaatgaatatagacatattctaata 33691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 943 - 1004
Target Start/End: Complemental strand, 33287693 - 33287632
Alignment:
Q  943 taatgaatttataatgaatatttacaagtcaaacatacaatgaatatatacatattctaata 1004  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33287693 taatgaattgctaatgaatatttacaagtcaaacatacaatgaatatagacatattctaata 33287632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 943 - 1004
Target Start/End: Original strand, 30803 - 30864
Alignment:
Q  943 taatgaatttataatgaatatttacaagtcaaacatacaatgaatatatacatattctaata 1004  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30803 taatgaattactaatgaatatttacaagtcaaacatacaatgaatatagacatattctaata 30864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 873 - 1004
Target Start/End: Original strand, 35375 - 35506
Alignment:
Q  873 tgaataatatacaattattgtcaatcctattttagaaattaaataattactagtgaatataattcctagttaatgaatttataatgaatatttacaagtc 972  Q
    |||||||||||||| ||||||  || ||||| |||||| ||| | ||| ||| | |||||||||| |   |||  ||||  |||| ||||||||||||||    
T  35375 tgaataatatacaactattgttgattctattctagaaactaattgattgctaatcaatataattcatgactaaacaattgctaattaatatttacaagtc 35474  T
Q  973 aaacatacaatgaatatatacatattctaata 1004  Q
    |||||||||||||||||| |||||||||||||    
T  35475 aaacatacaatgaatatagacatattctaata 35506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 954 - 1004
Target Start/End: Original strand, 24283 - 24333
Alignment:
Q  954 taatgaatatttacaagtcaaacatacaatgaatatatacatattctaata 1004  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  24283 taatgaatatttacaagtcaaacatacgatgaatatagacatattctaata 24333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 956 - 1005
Target Start/End: Complemental strand, 13116154 - 13116105
Alignment:
Q  956 atgaatatttacaagtcaaacatacaatgaatatatacatattctaatat 1005  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  13116154 atgaatatttacaagtcaaatatacaatgaatataaacatattataatat 13116105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 954 - 1004
Target Start/End: Original strand, 28565504 - 28565550
Alignment:
Q  954 taatgaatatttacaagtcaaacatacaatgaatatatacatattctaata 1004  Q
    |||| |||||||||||||||||||    |||||||||||||||||||||||    
T  28565504 taatcaatatttacaagtcaaaca----atgaatatatacatattctaata 28565550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 4407870 - 4407935
Alignment:
Q  375 gaaccagactaagtcaaatactttttcgatttggtttg-gttaaatttttggtttcgtcgattttg 439  Q
    ||||||||| | ||| ||||||||||||||||||| ||  ||||| |||||||||||||| |||||    
T  4407870 gaaccagacaatgtcgaatactttttcgatttggtctgatttaaacttttggtttcgtcggttttg 4407935  T

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