View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13846_low_11 (Length: 304)

Name: NF13846_low_11
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13846_low_11
NF13846_low_11
[»] chr7 (1 HSPs)
chr7 (1-294)||(48082543-48082825)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 48082825 - 48082543
Alignment:
Q  1 tttcttgtaaataagatcggaaaatataatttaaattcatatatgaataacgtgttataaaagtacgttatttctttttctaattcaattcgcaaaagac 100  Q
    |||||| ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |          |||||    
T  48082825 tttcttataaataagacccgaaagtataatttaaattcatatatgaataacgtgttataaaagtacgttatttctttttttaaat----------aagac 48082736  T
Q  101 aaatagcttcattctgaaatgactaagttgtgtttgaataggtggtnnnnnnntgtaattcaatagaatggtgtttaatattttaaaattgatgttatat 200  Q
    || ||| |||||||||||||||||||||| ||||||||||||||||       |||||||||||| ||||||||||||||||||||||||||||||||||    
T  48082735 aactagtttcattctgaaatgactaagttatgtttgaataggtggtaaaaaa-tgtaattcaatataatggtgtttaatattttaaaattgatgttatat 48082637  T
Q  201 cttccataatataccactaatacaatgtacctaaaaaagattaaggtgtaattttttgaatttttatttcctctgtaactgttatagtagtatt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48082636 cttccataatataccactaatacaatgtacctaaaaaagattaaggtgtaattttttgaatttttatttcctctgtaactgttatagtagtatt 48082543  T

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