View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13846_low_12 (Length: 284)
Name: NF13846_low_12
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13846_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 36999019 - 36998765
Alignment:
| Q |
21 |
ttcctaacatgtgttgaactaatttatctccagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaaga |
120 |
Q |
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| T |
36999019 |
ttcctaacatgtgttgaactaatttatctccagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaaga |
36998920 |
T |
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| Q |
121 |
tgaaccaggcagagctagataagctggcagcacgtgaacacaatgcggcggtcaaacagacgaccactgctgcggctgggcatatgggtcagccccacca |
220 |
Q |
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| T |
36998919 |
tgaaccaggcagagctagataagctggcagcacgtgaacacaatgcggcggtcaaacagacgaccactgctgcggctgggcatatgggtcagccccacca |
36998820 |
T |
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| Q |
221 |
caccacagggacgactggaacggggaccgccacatactctaccactgagaattat |
275 |
Q |
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| T |
36998819 |
caccacagggacgactggaacggggaccgccacatactctaccactgggaattat |
36998765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 36994182 - 36994070
Alignment:
| Q |
51 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcag |
150 |
Q |
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| T |
36994182 |
cagacagagaagatgacggcacatgatcctttgcaaaaagagatggcaacccaaaagaaagaagaaagggttaaccaggctgagcttgataaagaggcgg |
36994083 |
T |
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| Q |
151 |
cacgtgaacacaa |
163 |
Q |
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| T |
36994082 |
cgcgtgaacacaa |
36994070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 36988407 - 36988346
Alignment:
| Q |
51 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaaga |
112 |
Q |
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| T |
36988407 |
cagacagagaagatgacggcacatgatcctttgcaaaaggagatggcaacccaaaagaaaga |
36988346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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