View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13846_low_3 (Length: 615)
Name: NF13846_low_3
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13846_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 19 - 607
Target Start/End: Complemental strand, 49065674 - 49065086
Alignment:
| Q |
19 |
aatctaccaacactactttgtgataataatcctgtttcctggaaagtttgcatcagtagctttcctcttccaggttgttgattcataaggggtcttgacc |
118 |
Q |
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| T |
49065674 |
aatctaccaacactactttgtgataataatcctgtttcctgcaaagtttgcatcagcagctttcctcttccaggttgttgattcataaggggtcttgacc |
49065575 |
T |
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| Q |
119 |
aaccatgatatccataataagtgctttcagttccaaagccattggatgaaaaattatgaattggcttttgaacaatagagtgcaccttgattgaaagtgg |
218 |
Q |
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| T |
49065574 |
aaccatgatatccataataagtgctttcagttccaaagccattggatgaaaaattatgaattggcttttgaacaatagagtgcaccttgattgaaagtgg |
49065475 |
T |
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| Q |
219 |
tctcatactattactgttagcaccatagagtggtaggatagatgccatatttgcataacggtggtgaagatgattatgaagaaatgaggttgttcctgtt |
318 |
Q |
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| T |
49065474 |
tctcatactattactgttagcaccatagagtggtagtagagatgccatatttgcataacggtggtgaagatgattatgaagaaatgaggttgttcctgtt |
49065375 |
T |
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| Q |
319 |
gctgagaacatcgtcctccgtcctctttttgcaattgacctctctctcttgtgagcattttgatgtcccccaagtgcttgtgaactgaagaattttctct |
418 |
Q |
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| T |
49065374 |
gctgagaacatcgtcctccgtcctctttttgcaattgacctctctctcttgtgagcattttgatgtcccccaagtgcttgtgaactgaagaattttctct |
49065275 |
T |
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| Q |
419 |
tgcagtagttgcaagtgaaaaaacgtggctctgaagttgattcagagccacaagtgaaattttctgaggatgttttagaagaattatctatgtccaaaca |
518 |
Q |
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| T |
49065274 |
tgcagtagttgcaagtgaaaaaacgtggctctgaagttgattcagagccacaagtgaaattttctgaggatgttttagaagaattatctatgtccaaaca |
49065175 |
T |
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| Q |
519 |
tgtaactaaatttgactttgaattgcacccaagatcacaatcattgttaggaacattcagatcaaatgaagtatctaccttttcctcct |
607 |
Q |
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| T |
49065174 |
tgtaactaaatttgacattgaattgcacccaagatcacaatcattgttaggaacattcagatcaaatgaagtatctacctttgcctcct |
49065086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 416
Target Start/End: Original strand, 2867116 - 2867194
Alignment:
| Q |
338 |
gtcctctttttgcaattgacctctctctcttgtgagcattttgatgtcccccaagtgcttgtgaactgaagaattttct |
416 |
Q |
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| T |
2867116 |
gtcctctttttgctattgatctctctcttttgtgagcattttggtgtccacctaatgcttgtgagctatagaattttct |
2867194 |
T |
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