View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13846_low_4 (Length: 572)
Name: NF13846_low_4
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13846_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 155 - 551
Target Start/End: Original strand, 32371530 - 32371921
Alignment:
| Q |
155 |
atgtctagagactaagattgtgattatcaatcactagaagctggataatatcgttcactagaaggnnnnnnnnnnngaatctagtttgtgaggtactctt |
254 |
Q |
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| T |
32371530 |
atgtcaagagactaagattgtgattatcgatcactagaagctggataatatcgatcactagaaggaaaaaaaa----aatctagtttgtgaggtactctt |
32371625 |
T |
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| Q |
255 |
tacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattc |
354 |
Q |
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| T |
32371626 |
tacacaaattgactggccttttatgcatcaaaa-atgttagcttttatgctttcaaaggcataactctgccttattttcaccttggaattgctgcaattc |
32371724 |
T |
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| Q |
355 |
atgaataaataaatactgtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagtttacgagcccagcaaccca |
454 |
Q |
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| T |
32371725 |
atgaataaataaatactgtttggaattgtatttatatcatggttaaaaagcttgcaagtcagcttgtagacttggccaagtttacgagcccagcaaccca |
32371824 |
T |
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| Q |
455 |
tacaagttggctcgccaacataatcgttttctggacagatgcgagaaaagctcacgattatggagttcgaannnnnnnctaaaaaagcccaaatcgc |
551 |
Q |
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| T |
32371825 |
tacaagttggctcacgaacatattcgttttctggacagatgcgagaaaaactcacgattatggagttcgaatttttttctaaaaaagcccaaatcgc |
32371921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 240 - 482
Target Start/End: Complemental strand, 32365224 - 32364989
Alignment:
| Q |
240 |
ttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttcaccttg |
339 |
Q |
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| T |
32365224 |
ttgtgaggcactctttacacaaattgactggccttttatgcattaaaaaatgttaccttttatgctttcaaag-----actatgccctattttcaccttg |
32365130 |
T |
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| Q |
340 |
gaattgctgcaattcatgaataaataaatact--gtttggaattgtatttatatcatggttggaaaactcgcaagtcagcttgtagacttggccaagttt |
437 |
Q |
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| T |
32365129 |
gaattgc---aattcatgaataa-taaatactctgtctggaattgtatttatatcatggttagcaaactcgcaagtcagctcgtagagttggccaagttt |
32365034 |
T |
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| Q |
438 |
acgagcccagcaacccatacaagttggctcgccaacataatcgtt |
482 |
Q |
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| T |
32365033 |
acgagtccagctacccatacaagttgactcgcgaacataatcgtt |
32364989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 32357047 - 32357192
Alignment:
| Q |
60 |
aaaggaagtgttgtaacattgtgagattgtttaatattctcaatttattatgtcaaatagccttgagtgggtcagcttatttt-ttcctccaaaacatgt |
158 |
Q |
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| T |
32357047 |
aaaggaagtgttgtaacattgtgagatggttcaatattcacaatttatgatgtcaaataaccttgagtgg-tcaggttatttttttcctccaaaacatgt |
32357145 |
T |
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| Q |
159 |
ctagagactaagattgtgattatcaatcactagaagctggataatat |
205 |
Q |
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| T |
32357146 |
ctagaaactaagattgtgactatctatcactagaagctggataatat |
32357192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 32371429 - 32371536
Alignment:
| Q |
14 |
atatctaggtcagaaggcaacaaccttagtattatagtgaggctc------gaaaggaagtgttgtaacattgtgagattgtttaatattctcaatttat |
107 |
Q |
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| T |
32371429 |
atatctaggtcagaaggcaacaaccttagtattatactgaggctctccctcgaaaggaagtgttgtaacattgtgagattgtttaatattcacaatttat |
32371528 |
T |
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| Q |
108 |
tatgtcaa |
115 |
Q |
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| T |
32371529 |
tatgtcaa |
32371536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 235 - 385
Target Start/End: Original strand, 32357335 - 32357484
Alignment:
| Q |
235 |
ctagtttgtgaggtactctttacacaaattgactggccttttatgcatcaaaaaatgttaggttttatgctttcaaaggcataactctgccttattttca |
334 |
Q |
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||||||||||| ||| ||||||||| || ||||||||||||||||||| | | || ||||||||||||| |||| |||| |||||| |||| |||||| |
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| T |
32357335 |
ctagtttgtgaagtattctttacaccaactgactggccttttatgcattagagaagtttaggttttatgccttcaccggcagaactcttccttcttttca |
32357434 |
T |
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| Q |
335 |
ccttggaattgctgcaattcatgaataaataaata--ctgtttggaattgtat |
385 |
Q |
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| T |
32357435 |
tcccagaat---tgcaattcatgaataaagaaatactctgtttgtaattgtat |
32357484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 32364939 - 32364860
Alignment:
| Q |
115 |
aatagccttgagtgggtcagcttattttttcctccaaaacatgtctagagactaagattgtgattatcaatcactagaagct |
196 |
Q |
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| T |
32364939 |
aataaccttgagtgggtcaggttattttttcctccaaaac--gtctagaaattaagattctaactatctatcactagaagct |
32364860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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