View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13846_low_5 (Length: 542)
Name: NF13846_low_5
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13846_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 4784160 - 4783692
Alignment:
| Q |
19 |
tgggataccataagtacttgaagagagacataagaatatagtgaagatgataatgaggagaaatgggtttgatgtgagcgacatcatcaaagtttgatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4784160 |
tgggataccataagtacttgaagagagacataagaatatagtgaagatgataatgaggagaaatgggtttgatgtgagcgacatcatcaaagtttgatta |
4784061 |
T |
|
| Q |
119 |
aaaccaactgatttgtagtagnnnnnnnnnnnngtaaaagatttggagtggttaacaaaacgtagtatagaaaa-tgtgttttcctggtattaccatgta |
217 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4784060 |
aaaccaactgatttggagtagttttttttt---gtaaaagatttggagtggttaacaaaacgtagtatagaaaaatgtgttttcctggtattaccatgta |
4783964 |
T |
|
| Q |
218 |
tttatagtgaatgaattggcaaaacaattggtggtcaaattcaataataatcattaaaacaacaatatatacataatatatacnnnnnnnnggtcaaata |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
4783963 |
tttatagtgaatgaattggcaaaacaattggtggtcaaatttaataataatcattaaaacaacaatatatacataatatattcttttttttggtcaaata |
4783864 |
T |
|
| Q |
318 |
tatatctactttcaatattctatataaggtagagttttattatgggagactagaccatattttaagtttaattagttttattgctcagcttctagagaca |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4783863 |
tatatctactttcaatattctatataaggtagagttttattatgggagactagaccatattttaagt----ttagttttattgctcagcttctagagaca |
4783768 |
T |
|
| Q |
418 |
g-----------nnnnnnnnngttttagtgtttcttcaatttatatatttgtgatttagatgttaccaaagtaaat |
482 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4783767 |
gtttttttgtttttttgttttgttttagtgtttcttcaatttatatatttgtgatttagatgttaccaaagtaaat |
4783692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University