View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13846_low_6 (Length: 445)
Name: NF13846_low_6
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13846_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Complemental strand, 14071752 - 14071354
Alignment:
| Q |
13 |
aatattcgaagaattaatctccgcacatgtttggaggatatataccctcttacatgtatctttgtgtatcatcctgtctgcgtctctcatcctcaagtcc |
112 |
Q |
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|||| ||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
14071752 |
aatactcgaagaattaatctccgcacgtgtttagaggatatataccctcctacatgtatc----------atcttgtctgcgtctctcatcctcaagtcc |
14071663 |
T |
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| Q |
113 |
ttctcttgtatttgttgaccttgtaggtatcaaaaagcatatgattaaggatgatgtagacaaaccttcatgttggctcatgtttgtattcctcttagtg |
212 |
Q |
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| T |
14071662 |
tcctcttgtatttgttgaccttgtaggtatcaaaaagtatatgattaaggatgatgtagacaaaccttcatgttggctcatggttgtattcctcttagtg |
14071563 |
T |
|
| Q |
213 |
tcatgttgcccttgtccattgagccaatttggtgcgggactcccttcttttctaatttctagcaccggacccagagttgaggaaataggatcaattcgag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14071562 |
tcatgttgcccttgtccattgagccaatttggtgcgtggctcccttcttttctaatttctagcaccggacccagagttgaggaaataggatcaattcgag |
14071463 |
T |
|
| Q |
313 |
tagcaattaagtattaaaaagaactgaggaaattgggcaaaaattccattttaaaccaatcatctaattctttttctttaaacgttatttgttggttttg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14071462 |
tagcaattaagtattaaaaagaactgaggaaattgggcaaaaattccattttaaaccaatcatctaattctttttctttaaacgttatttgttggttttg |
14071363 |
T |
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