View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13846_low_7 (Length: 435)
Name: NF13846_low_7
Description: NF13846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13846_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 4543803 - 4544223
Alignment:
| Q |
1 |
ctacatgaataaacaactactcccaacaggctactactctgctagttgtgaatccnnnnnnnnn----aatcagtgaaaatttattcatgttgagttgta |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4543803 |
ctacatgaataaacaactactcccaacaggctactactctgctagttgtgaatcctttttttttttttaatcagtgaaaatttattcatgttgagttgta |
4543902 |
T |
|
| Q |
97 |
caaaaagccgtacccctcgcggataaaaacgaaaagagcgaaacatacaaaaggtgccgcatatatacgaaacaccaaaacaccaccatggccaagaaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
4543903 |
caaaaagccgtacccctcgcggataaaaacgaaaagagcgaaacatacaaaaggtgccgcatatatacggaacaccaaaacaccaccatgcccaagaaaa |
4544002 |
T |
|
| Q |
197 |
aggctcaacactaataccccaattaacataatcctgatgctaatgtatgcaaccaaggaaaataag-aaagcaacctaagtaacagcctataagcactgc |
295 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
4544003 |
aggctcaacactaatacaccaattaacataatcctgatgctaatgtatgcaaccaaggaaaataagaaaagcaacgtaagtaacagcctataagcactgc |
4544102 |
T |
|
| Q |
296 |
cataagtaccagttccttattaagcctaactgcgcatacccaagcctcaaaatccatctcctagaacacggcaacagtgcccacacaccaaaacagcagg |
395 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4544103 |
cataagtaccagttccttactaagcctaactgtgcatacccaagcctcaaaatccatctcctagaacacggcaacagtgcccacacaccaaaacagcagg |
4544202 |
T |
|
| Q |
396 |
ggaacagcaagcacacctaat |
416 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4544203 |
ggaacagcaagcacacctaat |
4544223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 115 - 267
Target Start/End: Original strand, 905725 - 905874
Alignment:
| Q |
115 |
gcggataaaaacgaaaagagcgaaacatacaaaaggtgccgcatatatacgaaacaccaaaacaccaccatggccaagaaaaaggctcaacactaatacc |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| | |||| || |||||||||| |||| | ||||||| | |
|
|
| T |
905725 |
gcggataaaaacgaaaagaaagaaacatacaaaaggtaccgcatatatacggtacaccaaaa-atcaccttgcccaagaaaaaagctccatactaataac |
905823 |
T |
|
| Q |
215 |
ccaattaacataatcctgatgctaatgtatgcaaccaaggaaaataagaaagc |
267 |
Q |
| |
|
|||| || |||| |||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
905824 |
ccaa-aaaggtaat-atgatgctagtgtatgcaaccaaggaaaataggaaagc |
905874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 100 - 267
Target Start/End: Original strand, 8607351 - 8607514
Alignment:
| Q |
100 |
aaagccgtacccctcgcggataaaaacgaaaagagcgaaacatacaaaaggtgccgcatatatacgaaacaccaaaacaccaccatggccaagaaaaagg |
199 |
Q |
| |
|
|||||| |||| || ||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||| || |||||||||| | |
|
|
| T |
8607351 |
aaagccataccacttgcggataaaaatgaaaagaacgaaacata-aaaaggtgccgcatatatacggtacaccaaaa-accaccttgcccaagaaaaaag |
8607448 |
T |
|
| Q |
200 |
ctcaacactaataccccaattaacataatcctgatgctaatgtatgcaaccaaggaaaataagaaagc |
267 |
Q |
| |
|
||| | ||||||| ||| | || ||| | |||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
8607449 |
ctccatactaataaccc-agaaaggtaa-catgatgctagtgtatgcaaccaaggaaaataggaaagc |
8607514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 19873554 - 19873460
Alignment:
| Q |
89 |
gagttgtacaaaaagccgtacccctcgcggataaaaacgaaaagagcgaaacatacaaaaggtgccgcatatatacgaaacaccaaaacaccacc |
183 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||||||| | |||| |||||||||||||| ||||||||| || | |||||||| |||||| |
|
|
| T |
19873554 |
gagttgtacaagaagcggtaccgctcgcggataaaaacgaataaagcggaacatacaaaaggtaccgcatataggcggagcaccaaaaaaccacc |
19873460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 45032691 - 45032594
Alignment:
| Q |
73 |
aaaatttattcatgttgagttgtacaaaaagccgtacccctcgcggataaaaacgaaaagagcgaaacatacaaaaggtgccgcatatatacgaaaca |
170 |
Q |
| |
|
|||||||||||| || |||||||||||||| | || ||||||||||||||||| | || ||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
45032691 |
aaaatttattcacgtcgagttgtacaaaaaactataaccctcgcggataaaaacaataaatgcgggatatacaaaaggtgccgcatatatacggaaca |
45032594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 43818263 - 43818198
Alignment:
| Q |
95 |
tacaaaaagccgtacccctcgcggataaaaacgaaaagagcgaaacatacaaaaggtgccgcatat |
160 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||| ||||||||| | || ||||||| ||||| |
|
|
| T |
43818263 |
tacaaaaagccgtaccggtcgcagataaatacgaaaaaagcgaaacaaataacaggtgccacatat |
43818198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 40582303 - 40582339
Alignment:
| Q |
141 |
atacaaaaggtgccgcatatatacgaaacaccaaaac |
177 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
40582303 |
atacacaaggtgccgcatatatacggaacaccaaaac |
40582339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University